Browse Element(s) Details


Os.49576.1.S1_at

Description gb:AK063025.1
DB_XREF= gi:32973043
TID=Os.49576.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B09, full insert sequence.
FL= gb:AK063025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0812011/11B-box zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08080Os.27398.1.S1_at11/118+4580134..4584889LOC564510 protein, putative, expressed
LOC_Os08g08090Os.55321.1.S1_at11/118+4587327..4587829expressed protein
LOC_Os08g08100OsAffx.29096.1.S1_at11/118+4589434..4591178hypothetical protein
LOC_Os08g08110Os.5402.1.S1_at11/118+4593401..4598370diacylglycerol kinase, putative, expressed
LOC_Os08g08120Os.49576.1.S1_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08120Os.11132.1.S1_s_at11/118+4604159..4606390B-box zinc finger family protein, expressed
LOC_Os08g08130Os.31233.1.S1_at1/118+4611650..4613757transposon protein, putative, Pong sub-class
LOC_Os08g08140Os.47925.1.S2_at11/118+4625376..4632335D-mannose binding lectin family protein, expressed
LOC_Os08g08140OsAffx.16890.1.S1_x_at11/118+4625376..4632335D-mannose binding lectin family protein, expressed
LOC_Os08g08140Os.47925.1.S1_x_at10/118+4625376..4632335D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49576.1.S1_at--1137--211Chr08:4605699..4605723 (25 bp)
ATTTGGGCTACACAATCACGGCACG
LOC_Os08g08120
Os.49576.1.S1_at--343--9691Chr08:4605684..4605708 (25 bp)
TCACGGCACGGCACTATTCGGATCG
LOC_Os08g08120
Os.49576.1.S1_at--553--6651Chr08:4605651..4605675 (25 bp)
GTTGATCATTTCTTCCGATTTCGGA
LOC_Os08g08120
Os.49576.1.S1_at--470--10591Chr08:4605632..4605656 (25 bp)
TTCGGAGGCAAAGATCACGCGTTCT
LOC_Os08g08120
Os.49576.1.S1_at--943--6431Chr08:4605620..4605644 (25 bp)
GATCACGCGTTCTTGCATAAGGTTT
LOC_Os08g08120
Os.49576.1.S1_at--134--2911Chr08:4605602..4605626 (25 bp)
AAGGTTTTGATGCTTCGTGTCTGAT
LOC_Os08g08120
Os.49576.1.S1_at--1052--3631Chr08:4605590..4605614 (25 bp)
CTTCGTGTCTGATGCAAATGCCGAT
LOC_Os08g08120
Os.49576.1.S1_at--261--2291Chr08:4605575..4605599 (25 bp)
AAATGCCGATCGATGTGTCTCTTGC
LOC_Os08g08120
Os.49576.1.S1_at--167--8731Chr08:4605560..4605584 (25 bp)
TGTCTCTTGCAGGAGGACCAGCCGT
LOC_Os08g08120
Os.49576.1.S1_at--883--9691Chr08:4605297..4605321 (25 bp)
TCACAATCCTACTATTCCCAAGAAT
LOC_Os08g08120
Os.49576.1.S1_at--686--4051Chr08:4605203..4605227 (25 bp)
CGATGATGTAGTGTTCTTGCAAGCA
LOC_Os08g08120
Target Sequence 
ATTTGGGCTACACAATCACGGCACGGCACTATTCGGATCGATCGATCGGTTGATCATTTCTTCCGATTTCGGAGGCAAAG
ATCACGCGTTCTTGCATAAGGTTTTGATGCTTCGTGTCTGATGCAAATGCCGATCGATGTGTCTCTTGCAGGAGGACCAG
CCGTGCTCGACGTCGCAGCCGAGCTTGTGCCGGTACGCGTCCTCGGCTCACCATGGCGGTGGTGGCCGGAGCGACGAGGC
CACCTCCTCCCGGAACGGCGGTGGCGTCGGCGGCCGATTCCTTGCCTCCCGGCATAGGAAGAGATCGCCCTCGGATTTCC
GCCGGTCGGGGTTGGCGCAGTCGGTGAGCGGCGTGCAGGGGAGGAATTGCTCCAATGCGGTCGTTGGTCGAAATGAGTGA
GTTCACAATCCTACTATTCCCAAGAATTCCTAAGCTTAGCAACCATAATTTCATAAAAGCAAGAGAAAAAAAAATTCAAC
TTATCGAACAATGGCACGATGATGTAGTGTTCTTGCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis