Browse Element(s) Details


Os.49593.1.S1_x_at

Description gb:AK109671.1
DB_XREF= gi:32994880
TID=Os.49593.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B02, full insert sequence.
FL= gb:AK109671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2906011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28970OsAffx.20387.1.S1_x_at2/119+17617937..17620748transposon protein, putative, unclassified
LOC_Os09g28980Os.25754.2.S1_x_at3/119+17621478..17622124hypothetical protein
LOC_Os09g28980Os.53479.1.S1_x_at1/119+17621478..17622124hypothetical protein
LOC_Os09g28990NANA9+17622708..17623887hypothetical protein
LOC_Os09g29000OsAffx.22699.1.S1_x_at2/119+17624640..17629210retrotransposon protein, putative, unclassified
LOC_Os09g29010NANA9+17631049..17632587hypothetical protein
LOC_Os09g29020NANA9+17632816..17633758transposon protein, putative, unclassified
LOC_Os09g29030OsAffx.17958.1.S1_at11/119+17634624..17635178hypothetical protein
LOC_Os09g29040NANA9+17640165..17640861hypothetical protein
LOC_Os09g29050OsAffx.30071.1.S1_at6/119+17641594..17642559Mitochondrial carrier protein
LOC_Os09g29060Os.49593.1.S1_x_at11/119+17644486..17647500expressed protein
LOC_Os09g29070Os.26384.1.S1_at10/119+17647474..17652620Glucose-6-phosphate isomerase, putative, expressed
LOC_Os09g29080OsAffx.6434.1.S1_at10/119+17658912..17661226expressed protein
LOC_Os09g29080Os.51431.1.S1_at9/119+17658912..17661226expressed protein
LOC_Os09g29090OsAffx.9699.1.S1_at1/119+17666908..17671358retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49593.1.S1_x_at--992--7651Chr09:17646159..17646183 (25 bp)
GGGATGGCTTTCTTTATTGCCACAT
LOC_Os09g29060
Os.49593.1.S1_x_at--834--71Chr09:17646174..17646198 (25 bp)
ATTGCCACATACATATCGTCGCTTA
LOC_Os09g29060
Os.49593.1.S1_x_at--974--1691Chr09:17646203..17646533 (25 bp)
AGCCAATGAATGTTCTCCTGATCAA
LOC_Os09g29060
Os.49593.1.S1_x_at--114--6571Chr09:17646716..17646740 (25 bp)
GATTCATGGAGTGCCACAGCTATTG
LOC_Os09g29060
Os.49593.1.S1_x_at--786--2891Chr09:17647262..17647286 (25 bp)
AAGGTAGCAACTACAGCCTTCCGGA
LOC_Os09g29060
Os.49593.1.S1_x_at--109--5771Chr09:17647285..17647309 (25 bp)
GACGTCCTGCAGTGTGATATCCAAA
LOC_Os09g29060
Os.49593.1.S1_x_at--232--591Chr09:17647303..17647327 (25 bp)
ATCCAAATTTCTGTGAGCTGCTGCT
LOC_Os09g29060
Os.49593.1.S1_x_at--98--1611Chr09:17647318..17647342 (25 bp)
AGCTGCTGCTGTTACTGGCATGCTT
LOC_Os09g29060
Os.49593.1.S1_x_at--386--4991Chr09:17647335..17647359 (25 bp)
GCATGCTTCCCATCATCATTAGGTA
LOC_Os09g29060
Os.49593.1.S1_x_at--381--10071Chr09:17647404..17647428 (25 bp)
TAGTGTCTATTCGTTGGTTTGCCAT
LOC_Os09g29060
Os.49593.1.S1_x_at--362--7871Chr09:17647419..17647443 (25 bp)
GGTTTGCCATTGTAAGCTTTGACTT
LOC_Os09g29060
Target Sequence 
GGGATGGCTTTCTTTATTGCCACATACATATCGTCGCTTAAAACAGCCAATGAATGTTCTCCTGATCAAATTAGAAAAGC
CCTCAAGAAGACATTTTCATCTCGAAAGAGAAAAGGTAAACTTCGGAAGGCATGGAATGGGACAAAAGTTATTTATAATG
TAGATTCATGGAGTGCCACAGCTATTGGAATCTACCATAATCAAGCAATTCTTAAGGTAGCAACTACAGCCTTCCGGACG
TCCTGCAGTGTGATATCCAAATTTCTGTGAGCTGCTGCTGTTACTGGCATGCTTCCCATCATCATTAGGTAAATTGGCTA
ACACGGCCAGAAAGACCTGCAATACTCATGTAAAATAGTGTCTATTCGTTGGTTTGCCATTGTAAGCTTTGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49593.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis