Browse Element(s) Details


Os.49636.1.S1_at

Description gb:AK109595.1
DB_XREF= gi:32994804
TID=Os.49636.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D03, full insert sequence.
FL= gb:AK109595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3597011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35890NANA5+21204195..21207526transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35900OsAffx.4537.1.S1_at10/115+21208886..21209377hypothetical protein
LOC_Os05g35910NANA5+21211761..21212559hypothetical protein
LOC_Os05g35920OsAffx.27192.1.S1_x_at11/115+21213580..21214003hypothetical protein
LOC_Os05g35930NANA5+21217261..21218032expressed protein
LOC_Os05g35940OsAffx.27194.1.S1_at11/115+21221263..21221565hypothetical protein
LOC_Os05g35950OsAffx.14978.1.S1_at11/115+21222914..21224000hypothetical protein
LOC_Os05g35950OsAffx.27186.1.S1_at1/115+21222914..21224000hypothetical protein
LOC_Os05g35960OsAffx.14979.1.S1_at11/115+21228377..21229313hypothetical protein
LOC_Os05g35970Os.49636.1.S1_at11/115+21230060..21230874expressed protein
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g36000Os.52875.1.S1_at11/115+21239636..21241948expressed protein
LOC_Os05g36010Os.52438.1.S1_at11/115+21242563..21245109Subtilisin N-terminal Region family protein, expressed
LOC_Os05g36020NANA5+21249700..21250023hypothetical protein
LOC_Os05g36030NANA5+21251738..21252438retrotransposon, putative, centromere-specific
LOC_Os05g36040NANA5+21253856..21257279retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49636.1.S1_at--935--8371Chr05:21230396..21230420 (25 bp)
GGCGATGGATTTCTCTTTGACGGTA
LOC_Os05g35970
Os.49636.1.S1_at--405--1931Chr05:21230377..21230401 (25 bp)
ACGGTATGACTCCTTGCTTTTTATT
LOC_Os05g35970
Os.49636.1.S1_at--492--5031Chr05:21230348..21230372 (25 bp)
GCAGTAAGCATTTTGGTTGCGTGAT
LOC_Os05g35970
Os.49636.1.S1_at--134--8771Chr05:21230320..21230344 (25 bp)
TGTAGATGTAAAACGAGCTCCTTGT
LOC_Os05g35970
Os.49636.1.S1_at--883--1851Chr05:21230308..21230332 (25 bp)
ACGAGCTCCTTGTAAACTACTGACA
LOC_Os05g35970
Os.49636.1.S1_at--529--9731Chr05:21230261..21230285 (25 bp)
TCAAGTGAAGTCTACTCGCGCATCA
LOC_Os05g35970
Os.49636.1.S1_at--1000--3791Chr05:21230247..21230271 (25 bp)
CTCGCGCATCATATGTTTATGTCGT
LOC_Os05g35970
Os.49636.1.S1_at--1110--8711Chr05:21230228..21230252 (25 bp)
TGTCGTTAATCATCACATTGCTTGA
LOC_Os05g35970
Os.49636.1.S1_at--864--9691Chr05:21230216..21230240 (25 bp)
TCACATTGCTTGACGATGCCTGCAG
LOC_Os05g35970
Os.49636.1.S1_at--738--1631Chr05:21230193..21230217 (25 bp)
AGCGGTGCAGCCTGCTCATGTTTCT
LOC_Os05g35970
Os.49636.1.S1_at--755--1191Chr05:21230094..21230118 (25 bp)
AGTATAACTTTACCATTTGCACTGA
LOC_Os05g35970
Target Sequence 
GGCGATGGATTTCTCTTTGACGGTATGACTCCTTGCTTTTTATTTCTAGCAGTAAGCATTTTGGTTGCGTGATGAGTGTA
GATGTAAAACGAGCTCCTTGTAAACTACTGACAAGAAGATTAGCAAAATAAGTAATCAAGTGAAGTCTACTCGCGCATCA
TATGTTTATGTCGTTAATCATCACATTGCTTGACGATGCCTGCAGCGGTGCAGCCTGCTCATGTTTCTGGCATCAATGCA
TTGTCCATATTACGCATGTAATTGTCAGGTAAATCTTAAATGTCTTACTAGTACTGTATAACAGTATAACTTTACCATTT
GCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis