Browse Element(s) Details


Os.49647.1.S1_at

Description gb:AK111341.1
DB_XREF= gi:32996550
TID=Os.49647.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F08, full insert sequence.
FL= gb:AK111341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g501608/11multidrug resistance protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50140NANA1+29135092..29135604transposon protein, putative, unclassified
LOC_Os01g50149Os.36511.1.S1_at1/111+29150447..29150624NA
LOC_Os01g50160Os.9066.1.S1_s_at11/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50160Os.49647.1.S1_at8/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50170Os.50995.1.S1_at11/111+29162090..29163731Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g50180OsAffx.19542.3.S1_x_at10/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50180OsAffx.9949.1.S1_at1/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50190OsAffx.29949.1.S1_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50190OsAffx.29949.1.S1_x_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50200Os.5862.1.S1_at10/111+29174805..29176566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49647.1.S1_at--781--5871Chr01:29152581..29152605 (25 bp)
GAGCCGGGCGTATCTATCTTGTACA
NONE
Os.49647.1.S1_at--254--4651Chr01:29152902..29152926 (25 bp)
GCGTCAACCAGGTGAGCCTGCCTGC
LOC_Os01g50160
Os.49647.1.S1_at--1157--4671Chr01:29152971..29152995 (25 bp)
GCGGCTAACTTTCCGGTCGATTAAT
LOC_Os01g50160
Os.49647.1.S1_at--1044--9791Chr01:29152976..29153000 (25 bp)
TAACTTTCCGGTCGATTAATCCTCT
LOC_Os01g50160
Os.49647.1.S1_at--831--6551Chr01:29152989..29153013 (25 bp)
GATTAATCCTCTCGCCGTCGATGTG
LOC_Os01g50160
Os.49647.1.S1_at--952--9491Chr01:29152998..29153022 (25 bp)
TCTCGCCGTCGATGTGGAAGGAAAC
LOC_Os01g50160
Os.49647.1.S1_at--1105--2891Chr01:29153015..29153039 (25 bp)
AAGGAAACGCGCGCCGTGGATTAGC
LOC_Os01g50160
Os.49647.1.S1_at--894--6551Chr01:29153033..29153057 (25 bp)
GATTAGCGGCGTGCTCGATCGAGCT
LOC_Os01g50160
Os.49647.1.S1_at--396--7311Chr01:29153043..29153067 (25 bp)
GTGCTCGATCGAGCTTTGGCCAATT
LOC_Os01g50160
Os.49647.1.S1_at--274--3151NONE
AATTCAATCAATTTCACTCCCTTTC
NONE
Os.49647.1.S1_at--219--3131Chr07:4222660..4223036 (25 bp)
AATTTCACTCCCTTTCATTTCATTC
NONE
Target Sequence 
GAGCCGGGCGTATCTATCTTGTACACACAGTAAAGCTGCCAGCAATGGACGCGGCGGCGAACGGCGGCAGGGATGGCAAG
GAGAAGAAGGCGAAGAACGGCAGGGACGGCGAGGACAAGAAGAAGGAGGAGGACGGCGACGCCGGGAAGAAGGTGTCGTT
CACGGGGCTGTTCCGGTACGCCGACGGCACGGACCTGCTGCTGATGGCGGTCGGCACGGTGGCGGCGCTCGCCAACGGGG
TGTCGCAGCCGCTCATGACCGTCATCTTCGGCCAGGTCATCAACGCCTTCGGCGAGGCCACCAACGGCGACGTCCTCCAC
CGCGTCAACCAGGTGAGCCTGCCTGCCTCCCCGCCACAGCTAGCGCCGCCCGTCCGGCCGTGATCCGCGCGCGGCTAACT
TTCCGGTCGATTAATCCTCTCGCCGTCGATGTGGAAGGAAACGCGCGCCGTGGATTAGCGGCGTGCTCGATCGAGCTTTG
GCCAATTCAATCAATTTCACTCCCTTTCATTTCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis