Browse Element(s) Details


Os.49657.1.S1_at

Description gb:AK108735.1
DB_XREF= gi:32993944
TID=Os.49657.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D08, full insert sequence.
FL= gb:AK108735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2856011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein
LOC_Os09g28530NANA9+17353470..17353886hypothetical protein
LOC_Os09g28540OsAffx.6430.1.S1_at11/119+17355243..17356377hypothetical protein
LOC_Os09g28550Os.49767.1.S1_x_at9/119+17358273..17359272expressed protein
LOC_Os09g28550Os.49767.1.S1_at8/119+17358273..17359272expressed protein
LOC_Os09g28560Os.49657.1.S1_at11/119+17365406..17370402Protein phosphatase 2C containing protein, expressed
LOC_Os09g28570Os.5201.1.S1_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.2.S1_x_at11/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28570Os.5201.3.S1_at10/119+17376007..17387956oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os09g28580Os.57141.1.S1_at11/119+17389976..17391540expressed protein
LOC_Os09g28580Os.15898.1.S1_at10/119+17389976..17391540expressed protein
LOC_Os09g28590Os.38287.1.S1_at11/119+17392610..17394621DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49657.1.S1_at--227--10051Chr09:17367620..17367644 (25 bp)
TAGATCGAGAGTATGCTGAGCCAGA
LOC_Os09g28560
Os.49657.1.S1_at--536--2252Chr06:14969573..14969768 (25 bp)
AAATATTTGACGATGGTTCCGCTAT
NONE
Os.49657.1.S1_at--327--6251Chr09:17367573..17367597 (25 bp)
GATGGTTCCGCTATGCTTTCTAAAA
LOC_Os09g28560
Os.49657.1.S1_at--1106--9211Chr09:17366158..17366182 (25 bp)
TCCAGAGCATGTTTGAGCCCTTCAG
LOC_Os09g28560
Os.49657.1.S1_at--791--2671Chr09:17366107..17366131 (25 bp)
AAGCTGGCCAGGGAATTTCTGTACA
LOC_Os09g28560
Os.49657.1.S1_at--834--7611Chr09:17365506..17366018 (25 bp)
GGGAAACGACCTCCAAGAGATTCTT
LOC_Os09g28560
Os.49657.1.S1_at--26--6431Chr09:17365845..17365869 (25 bp)
GATCTACACTCTACAATAACCATGG
LOC_Os09g28560
Os.49657.1.S1_at--1120--1091Chr09:17365812..17365836 (25 bp)
AGTGGTGACAAGTGGCAGGCCCATT
LOC_Os09g28560
Os.49657.1.S1_at--473--8271Chr09:17365799..17365823 (25 bp)
GGCAGGCCCATTTGTTGGAGACATT
LOC_Os09g28560
Os.49657.1.S1_at--82--8071Chr09:17365783..17365807 (25 bp)
GGAGACATTCCTTCATACAATCAAT
LOC_Os09g28560
Os.49657.1.S1_at--1030--6791Chr09:17365719..17365743 (25 bp)
GTTATTTTGCTACATTGTTCTCTGT
LOC_Os09g28560
Target Sequence 
TAGATCGAGAGTATGCTGAGCCAGATGAGGTGGNAGAAATATTTGACGATGGTTCCGCTATGCTTTCTAAAAGGCTTGCT
GCANGTTATGCACTCCAGAGCATGTTTGAGCCCTTCAGCTGTGCAGTTTGCCAAGTACANTTGAAAGCTGGCCAGGGAAT
TTCTGTACACAGCAATNCATTGCAACACGNAAAATTGCAAGGNTGGCAGGGACCTTTCCTGTGNCAAAGCTGCAACGNNA
AAGAAAGNCGCAATTGAAGGGAAACGACCTCCAAGAGATTCTTGATCTACACTCTACAATAACCATGGTTTTGCTGAGTG
GTGACAAGTGGCAGGCCCATTTGTTGGAGACATTCCTTCATACAATCAATATTCTTTTGTTCGTTACTAGAAACACTAGT
CAAACCAGAGTTATTTTGCTACATTGTTCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis