Browse Element(s) Details


Os.49658.1.S1_at

Description gb:AK101368.1
DB_XREF= gi:32986577
TID=Os.49658.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035L13, full insert sequence.
FL= gb:AK101368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4581010/11Calcineurin B-like protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified
LOC_Os05g45810Os.49658.1.S1_at10/115+26452672..26454595Calcineurin B-like protein 4, putative, expressed
LOC_Os05g45820Os.54943.1.S1_at10/115+26454737..26458707heavy metal-associated domain containing protein, expressed
LOC_Os05g45830Os.18098.1.S1_at11/115+26461396..26468874expressed protein
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006499biological_processN-terminal protein myristoylation
GO:0006950biological_processresponse to stress
GO:0006970biological_processresponse to osmotic stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0019722biological_processcalcium-mediated signaling
GO:0030007biological_processpotassium ion homeostasis
GO:0042539biological_processhypotonic salinity response
GO:0005886cellular_componentplasma membrane
GO:0005955cellular_componentcalcineurin complex
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49658.1.S1_at--1109--271Chr05:26454021..26454045 (25 bp)
AGGCGAACCCGGCATCACTAAGGAA
LOC_Os05g45810
Os.49658.1.S1_at--36--2511Chr05:26454044..26454067 (24 bp)
AACATGTCACTTCCCTATTTGCAGG
LOC_Os05g45810
Os.49658.1.S1_at--368--10271Chr05:26454061..26454180 (25 bp)
TTTGCAGGACATTACCATGGCGTTC
LOC_Os05g45810
Os.49658.1.S1_at--790--8311Chr05:26454174..26454198 (25 bp)
GGCGTTCCCGAGCTTTGTAATGCAT
LOC_Os05g45810
Os.49658.1.S1_at--920--4791Chr05:26454276..26454300 (25 bp)
GCTCGAGGCAGCTCAATTTGTTGGA
LOC_Os05g45810
Os.49658.1.S1_at--457--4631Chr05:26454336..26454360 (25 bp)
GCGTTGACCGTCATCGCATGAGTGA
LOC_Os05g45810
Os.49658.1.S1_at--668--4891Chr05:26454409..26454433 (25 bp)
GCTTTTCTTCTGCTTATGCGAGGGA
LOC_Os05g45810
Os.49658.1.S1_at--427--8931Chr05:26454493..26454517 (25 bp)
TGACCTGCTGAAATGCCTTCTTTTT
LOC_Os05g45810
Os.49658.1.S1_at--1104--10351Chr05:26454514..26454538 (25 bp)
TTTTTTCCCGTCTTGTATGTATAGT
LOC_Os05g45810
Os.49658.1.S1_at--400--7371Chr05:26454551..26454575 (25 bp)
GTGACACTGGTGACCATTGACCTAT
LOC_Os05g45810
Os.49658.1.S1_at--678--6331Chr05:26454585..26454609 (25 bp)
GATGCAGGAGTGTTCATTTTTCTTC
NONE
Target Sequence 
AGGCGAACCCGGCATCACTAAGGAACATGTCACTTCCCTATTTGCAGGACATTACCATGGCGTTCCCGAGCTTTGTAATG
CATTCAGAAGCCCATGACTGAAAATNCAGNTCCCATTGGNACGNNTTNCAAGNAACCAAAAGTTCTCCATTNGTTGCTGA
AGCTCGAGGCAGCTCAATTTGTTGGATGCGCCGGAGTTCAGAAGCAGGCTGCAACTGAAATGCGTTGACCGTCATCGCAT
GAGTGAATGACGCCATGAACAACAGAATGGCATCTGATAATAAGTATCAGAGTGGCTTTTCTTCTGCTTATGCGAGGGAT
ACAGAGGGCCCAGCAGCAAGATTGTTCAACGAAGCAACACAAGCAAAATTAAGCACTCTGACCTGCTGAAATGCCTTCTT
TTTTTCCCGTCTTGTATGTATAGTTGTGAGTCAGAAGTGACACTGGTGACCATTGACCTATAGTTGAAGAGATGCAGGAG
TGTTCATTTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis