Browse Element(s) Details


Os.18098.1.S1_at

Description gb:AK068203.1
DB_XREF= gi:32978221
TID=Os.18098.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146A03, full insert sequence.
FL= gb:AK066927.1 gb:AK068203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4583011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified
LOC_Os05g45810Os.49658.1.S1_at10/115+26452672..26454595Calcineurin B-like protein 4, putative, expressed
LOC_Os05g45820Os.54943.1.S1_at10/115+26454737..26458707heavy metal-associated domain containing protein, expressed
LOC_Os05g45830Os.18098.1.S1_at11/115+26461396..26468874expressed protein
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18098.1.S1_at--67--811Chr05:26461967..26461991 (25 bp)
ATGGGCAGTTGCTATTGTGTAATTA
LOC_Os05g45830
Os.18098.1.S1_at--372--2171Chr05:26461850..26461874 (25 bp)
ACACCGTCCATGTTGCTATTGATCA
LOC_Os05g45830
Os.18098.1.S1_at--620--7811Chr05:26461775..26461799 (25 bp)
GGTCTCTGTTATTGTAAGCTCCTTT
LOC_Os05g45830
Os.18098.1.S1_at--463--9071Chr05:26461711..26461735 (25 bp)
TGCTTGTGTTGCTCAGCTGACTTGA
LOC_Os05g45830
Os.18098.1.S1_at--63--4751Chr05:26461696..26461720 (25 bp)
GCTGACTTGATCACTGTCGGTTAAT
LOC_Os05g45830
Os.18098.1.S1_at--169--7191Chr05:26461681..26461705 (25 bp)
GTCGGTTAATCCGTTATGACATTTT
LOC_Os05g45830
Os.18098.1.S1_at--593--6411Chr05:26461653..26461677 (25 bp)
GATCTGCTATGTGATGTGTTCCCTT
LOC_Os05g45830
Os.18098.1.S1_at--365--4631Chr05:26461612..26461636 (25 bp)
GCGATATACTAGTTCGGTACGTGTT
LOC_Os05g45830
Os.18098.1.S1_at--609--3671Chr05:26461571..26461595 (25 bp)
CTTTCTGTTCAGTTCATACTACTTG
LOC_Os05g45830
Os.18098.1.S1_at--24--2571Chr05:26461545..26461569 (25 bp)
AACTGTGTAAGCACCAGGTCTTCTG
LOC_Os05g45830
Os.18098.1.S1_at--927--5271Chr05:26461427..26461451 (25 bp)
GAATGTTGTACATGCACGTCTTATA
LOC_Os05g45830
Target Sequence 
ATGGGCAGTTGCTATTGTGTAATTAGGTGAGATTTACANTGGTACACCGTCCATGTTGCTATTGATCATCTTCACANTTG
GCATGCATATATGAATAATGCGCGATGGAGAATACGTGAGGTCTCTGTTATTGTAAGCTCCTTTTCTTGGTGAAAGAGGG
GGAATACAAGGTGGTGTTGGGTTTGCTTGTGTTGCTCAGCTGACTTGATCACTGTCGGTTAATCCGTTATGACATTTTGA
AGATCTGCTATGTGATGTGTTCCCTTTGCTGAAGATATTGTCGCGATATACTAGTTCGGTACGTGTTAGTGTTACNACNA
GAGTTCTTTCTGTTCAGTTCATACTACTTGTAACTGTGTAAGCACCAGGTCTTCTGAATTACTACAATTTTACCANTTGG
TTTCCCTTTATAGTGGAGTATGATATTAACAACTACTACGTAGAAAGATGTAAAAGTGAGAAACTTATGTGAATGTTGTA
CATGCACGTCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis