Browse Element(s) Details


Os.51679.1.S1_at

Description gb:AK063362.1
DB_XREF= gi:32973380
TID=Os.51679.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D03, full insert sequence.
FL= gb:AK063362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4586011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45830Os.18098.1.S1_at11/115+26461396..26468874expressed protein
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51679.1.S1_at--1126--6271Chr05:26487740..26487764 (25 bp)
GATGTTTATTTCCAGTGCAGATTCT
LOC_Os05g45860
Os.51679.1.S1_at--633--6631Chr05:26487699..26487723 (25 bp)
GTTGTGCCACTGAGATTTTTGCCTA
LOC_Os05g45860
Os.51679.1.S1_at--599--171Chr05:26487685..26487709 (25 bp)
ATTTTTGCCTACATCCTTCTTGATT
LOC_Os05g45860
Os.51679.1.S1_at--529--10791Chr05:26487666..26487690 (25 bp)
TTGATTCTCCTAATGGTTGTGTCCA
LOC_Os05g45860
Os.51679.1.S1_at--1068--7911Chr05:26487652..26487676 (25 bp)
GGTTGTGTCCATTCTTACATAGAGT
LOC_Os05g45860
Os.51679.1.S1_at--257--10791Chr05:26487507..26487531 (25 bp)
TTGTAAAGCATTTTTCCCCTCGTAT
LOC_Os05g45860
Os.51679.1.S1_at--1065--5511Chr05:26487461..26487485 (25 bp)
GAAACAGAGCTGTATGCCTTCACCA
LOC_Os05g45860
Os.51679.1.S1_at--616--6471Chr05:26487394..26487418 (25 bp)
GATAGACTAGCCCTTCTTTATACCT
LOC_Os05g45860
Os.51679.1.S1_at--713--10511Chr05:26487364..26487388 (25 bp)
TTCAGCTTGCGATCTTGCAGTTCAT
LOC_Os05g45860
Os.51679.1.S1_at--592--6331Chr05:26487256..26487280 (25 bp)
GATGCTACCTACCTGTAACTGTAAG
LOC_Os05g45860
Os.51679.1.S1_at--250--7351Chr05:26487195..26487219 (25 bp)
GTGAATGAACGCTCTGCAATTTTAG
LOC_Os05g45860
Target Sequence 
GATGTTTATTTCCAGTGCAGATTCTAAGTGCTTCAGAAAGGGTTGTGCCACTGAGATTTTTGCCTACATCCTTCTTGATT
CTCCTAATGGTTGTGTCCATTCTTACATAGAGTCAGAGACAATGGAGGACCGGTAAGTGCTGATACCTTGGGGTTGTTGG
AGCATGACACAGTAAAGAACATAGGAACTGATACCTTGGGTTGTTGAAGAGTTGAAGCTGCAGTAACATAGGTTTGTAAA
GCATTTTTCCCCTCGTATTTTGATAGGCAAAACAAGGTGGAAACAGAGCTGTATGCCTTCACCACCGTGCCAGCGGTAAT
TTGCATGGATGAGAAATATGAGACAGGATAGACTAGCCCTTCTTTATACCTCTGTTTTCAGCTTGCGATCTTGCAGTTCA
TTTTTTTTTATTTTCTAAACGACCTTGCAGTTCAATTGTCAAGCTGAATGCTGGTATTTTACAGCAGCATGCCTTCCAAA
TACTGATGCTACCTACCTGTAACTGTAAGGCTGTAAACCAATGTATTGGCGGTACAGAGTCATATGTGAATGAACGCTCT
GCAATTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis