Browse Element(s) Details


Os.19143.1.S1_at

Description gb:AK063545.1
DB_XREF= gi:32973563
TID=Os.19143.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D02, full insert sequence.
FL= gb:AK063545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4589011/11tRNAHis guanylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19143.1.S1_at--20--5991Chr05:26512319..26512465 (25 bp)
GAGACAAGCAGAATGCCACACCACC
LOC_Os05g45890
Os.19143.1.S1_at--925--3371Chr05:26512462..26512486 (25 bp)
CACCAACCAATACAGCACATGCTTT
LOC_Os05g45890
Os.19143.1.S1_at--307--2111Chr05:26512478..26512502 (25 bp)
ACATGCTTTTGGATGCTAGTGAAAT
LOC_Os05g45890
Os.19143.1.S1_at--534--5611Chr05:26512654..26512678 (25 bp)
GACAAGAACGAGTTGCTTTTCCAGC
LOC_Os05g45890
Os.19143.1.S1_at--778--2231Chr05:26512697..26512721 (25 bp)
ACAATGAACCAGCTGTGTTTCGGAA
LOC_Os05g45890
Os.19143.1.S1_at--916--5311Chr05:26512719..26512743 (25 bp)
GAAGGGTTCATGTACTTACCGGCAA
LOC_Os05g45890
Os.19143.1.S1_at--114--8831Chr05:26512914..26512938 (25 bp)
TGATTGTGGCACACGCAGACATGGG
LOC_Os05g45890
Os.19143.1.S1_at--457--6891Chr05:26513049..26513073 (25 bp)
GTATATGCATTGTCCACACTAGTAG
LOC_Os05g45890
Os.19143.1.S1_at--133--2451Chr05:26513075..26513099 (25 bp)
AAAATGGCTGGCCTCTCTTCATTGG
LOC_Os05g45890
Os.19143.1.S1_at--1052--10851Chr05:26513096..26513120 (25 bp)
TTGGCCATTCATCTCGTTCATTTCG
LOC_Os05g45890
Os.19143.1.S1_at--956--10151Chr05:26513185..26513209 (25 bp)
TATATCTGTATCTTGCTGAATGGAA
LOC_Os05g45890
Target Sequence 
GAGACAAGCAGAATGCCACACCACCAACCAATACAGCACATGCTTTTGGATGCTAGTGAAATCTGGCAAAAGTGAAAACG
AAGCTCGTGAGATATTAAAGGGAACATTATCAAAGGACAAGAACGAGTTGCTTTTCCAGCAATTTCATTTGAATTACAAC
AATGAACCAGCTGTGTTTCGGAAGGGTTCATGTACTTACCGGCAAAAGGTGGAAGAATCTGCAGACGCAGAGGGTAGAGA
AAATACCACAAGAGAACGGTGGGATGTGATTGTGGCACACGCAGACATGGGGACGGAATTTTGGAGAAAGCATCCTTATA
TTTTAAGAAAATTGGATTTACTAGGCTGATAAAATTTTCTCATCAACCTTTTCCANATTATCTTTTCGTTGTTGTAGTGT
TGTATATGCATTGTCCACACTAGTAGAAAAATGGCTGGCCTCTCTTCATTGGCCATTCATCTCGTTCATTTCGTTCATGT
GCAAAACTNGTGCCCCTAAGATGCAGTTTNAGNNGACAGAATNGAGAATCGTGATGATATATCTGTATCTTGCTGAATGG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis