Browse Element(s) Details


OsAffx.4629.1.S1_at

Description tigr:9633.m04304
TID=OsAffx.4629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EndonucleaseExonucleasephosphatase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4590011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4629.1.S1_at--59--6931Chr05:26514472..26514496 (25 bp)
GTATGTTGCCACCTAACTTCTGGAG
LOC_Os05g45900
OsAffx.4629.1.S1_at--503--2751Chr05:26514408..26514432 (25 bp)
AAGAAATCCTCCGAAGAACAGTATT
LOC_Os05g45900
OsAffx.4629.1.S1_at--879--5491Chr05:26514393..26514417 (25 bp)
GAACAGTATTTAACCCACTTCCTGG
LOC_Os05g45900
OsAffx.4629.1.S1_at--89--10191Chr05:26514387..26514411 (25 bp)
TATTTAACCCACTTCCTGGACTTAG
LOC_Os05g45900
OsAffx.4629.1.S1_at--364--10671Chr05:26514375..26514399 (25 bp)
TTCCTGGACTTAGCACGCCTAAGGG
LOC_Os05g45900
OsAffx.4629.1.S1_at--556--3351Chr05:26514362..26514386 (25 bp)
CACGCCTAAGGGAATATTGGGTCAT
LOC_Os05g45900
OsAffx.4629.1.S1_at--234--10251Chr05:26514075..26514099 (25 bp)
TTTGGAGATCTCAACTACCGAATCA
LOC_Os05g45900
OsAffx.4629.1.S1_at--785--9691Chr05:26514065..26514089 (25 bp)
TCAACTACCGAATCAACTTATCATA
LOC_Os05g45900
OsAffx.4629.1.S1_at--59--2111Chr05:26514031..26514055 (25 bp)
ACATGAACTTATCTCCAAGCAAGAT
LOC_Os05g45900
OsAffx.4629.1.S1_at--694--3291Chr05:26513883..26513907 (25 bp)
CACACTTTTGATGGTTGGATCGAAG
LOC_Os05g45900
OsAffx.4629.1.S1_at--232--6391Chr05:26513866..26513890 (25 bp)
GATCGAAGGAGATATCAGCTTCCCC
LOC_Os05g45900
Target Sequence 
GTATGTTGCCACCTAACTTCTGGAGAAAAGGATGGCGATGAACTGAAAAGAAATGCAGATGTTGAAGAAATCCTCCGAAG
AACAGTATTTAACCCACTTCCTGGACTTAGCACGCCTAAGGGAATATTGGGTCATGAAAGGATCATATGGTTTGGAGATC
TCAACTACCGAATCAACTTATCATATGAAAGAGCACATGAACTTATCTCCAAGCAAGATTGGGATGGATTGTTTGAGAAT
GATCAGCTAAAAAGAGAATTGAGTAAAGGACACACTTTTGATGGTTGGATCGAAGGAGATATCAGCTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis