Browse Element(s) Details


Os.7768.1.S1_at

Description gb:AK062545.1
DB_XREF= gi:32972563
TID=Os.7768.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G06, full insert sequence.
FL= gb:AK062545.1 gb:AK061590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g459108/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7768.1.S1_at--184--2891Chr05:26523830..26523854 (25 bp)
AAGGGATTCCGCCTCGCGAGAACGA
LOC_Os05g45910
Os.7768.1.S1_at--799--2771Chr05:26522040..26522064 (25 bp)
AAGACCATGTGGATGCCCGTTACAA
LOC_Os05g45910
Os.7768.1.S1_at--536--6351Chr05:26522029..26522053 (25 bp)
GATGCCCGTTACAAAGCTCTTGACA
LOC_Os05g45910
Os.7768.1.S1_at--1065--4651Chr05:26521950..26521974 (25 bp)
GCGTGCCATCTGATTAGTCTGTTCA
LOC_Os05g45910
Os.7768.1.S1_at--391--10071Chr05:26521936..26521960 (25 bp)
TAGTCTGTTCATTGGCTGGCTTGAG
LOC_Os05g45910
Os.7768.1.S1_at--350--9811Chr05:26521885..26521909 (25 bp)
TAACCTGTGTTATCGTCTCTTGGAG
LOC_Os05g45910
Os.7768.1.S1_at--1032--7611Chr05:26521767..26521791 (25 bp)
GGGATACCCAACCTTGCAAAACCAT
LOC_Os05g45910
Os.7768.1.S1_at--872--2031Chr05:26521739..26521763 (25 bp)
ACTTTTGATGGCACTGAACCTTGGC
LOC_Os05g45910
Os.7768.1.S1_at--863--5011Chr05:26521716..26521740 (25 bp)
GCAGTCAAGCTCGATCATTTACCAA
NONE
Os.7768.1.S1_at--728--2831Chr05:26521678..26521702 (25 bp)
AAGTTTCTTTACCTGTTTGCTGCCA
NONE
Os.7768.1.S1_at--739--6351Chr05:26521635..26521659 (25 bp)
GATGCCTGCTGTTATTCTTTTTCAA
NONE
Target Sequence 
AAGGGATTCCGCCTCGCGAGAACGATGGGGTTCATGCTGCGGGTGAGGCTGGCCTCCTTCTTCGCCGGCGCCGCCGCCGC
CGGGGCCGCCGGCGGCTTCTTCCTCTACAAGGACTACAAGCTCGCCCACGACTCCATGGCCCTCCAGGTCAAAGGCCTAC
AAGACCATGTGGATGCCCGTTACAAAGCTCTTGACAAACGACTNGCTACATTGGAAGACCAGNAAACCAGCGAGACTGCT
CCAGACGTGGGCGTGCCATCTGATTAGTCTGTTCATTGGCTGGCTTGAGTATGGATGATTTACGACTGTTTACTTTAACC
TGTGTTATCGTCTCTTGGAGGCAAAAGCCGATGACTGACTGCAAAATAATTTAGTGAAGAGTTTTTTTTTTNNGTGTGTG
GCAATGAAGCTTCTGTAGTGTTATAGATGCCCATGGGGATACCCAACCTTGCAAAACCATTTCACTTTTGATGGCACTGA
ACCTTGGCAGTCAAGCTCGATCATTTACCAATGTACCTGTGTGAAAGTTTCTTTACCTGTTTGCTGCCAGGAACTTGGAT
GTTTTAAGATGCCTGCTGTTATTCTTTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis