Browse Element(s) Details


OsAffx.27333.1.S1_at

Description tigr:9633.m04302
TID=OsAffx.27333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=11757-10052
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g458809/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45890Os.19143.1.S1_at11/115+26508541..26513219tRNAHis guanylyltransferase family protein, expressed
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27333.1.S1_at--600--2391Chr05:26503561..26503585 (25 bp)
AAACTGCCAAGAATTTGTGCCCCTC
LOC_Os05g45880
OsAffx.27333.1.S1_at--69--8711Chr05:26503576..26503600 (25 bp)
TGTGCCCCTCTGACGAAGCCAAAGA
LOC_Os05g45880
OsAffx.27333.1.S1_at--426--8911Chr05:26503646..26503670 (25 bp)
TGAGCTTTCAGAGGATTACCAGTGC
LOC_Os05g45880
OsAffx.27333.1.S1_at--180--10471Chr05:26503661..26503685 (25 bp)
TTACCAGTGCGTAGGATTTTGCCAC
LOC_Os05g45880
OsAffx.27333.1.S1_at--131--6011Chr05:26503722..26503746 (25 bp)
GAGACCAAATTGCTGACCATCATTG
LOC_Os05g45880
OsAffx.27333.1.S1_at--770--6231Chr05:26504226..26504250 (25 bp)
GATGGCTGCAGACTACCATTCAGAA
LOC_Os05g45880
OsAffx.27333.1.S1_at--76--2431Chr05:26504249..26504273 (25 bp)
AAAAGCCTCACATACTGGACTACAC
LOC_Os05g45880
OsAffx.27333.1.S1_at--114--5391NONE
GAAGCAATTTGTGCAGAGCTACCTG
NONE
OsAffx.27333.1.S1_at--371--5911NONE
GAGCTACCTGAGCTCTTCAGGCGAG
NONE
OsAffx.27333.1.S1_at--876--1451Chr05:26504567..26504591 (25 bp)
AGAAGTACACCTTGGCAAGCCATCT
LOC_Os05g45880
OsAffx.27333.1.S1_at--621--2651Chr05:26504583..26504607 (25 bp)
AAGCCATCTCATTTGGGCCCTCTGG
LOC_Os05g45880
Target Sequence 
AAACTGCCAAGAATTTGTGCCCCTCTGACGAAGCCAAAGAGTTCTGCTTGGATAGCATGGAGAACGAGATCACTGCGTTG
GAAAATGAGCTTTCAGAGGATTACCAGTGCGTAGGATTTTGCCACAACGATCTCCAGTATGGAAACATCATGATTGATGA
AGAGACCAAATTGCTGACCATCATTGACTATGAGTATGCAAGTTTTGGTCCAGTTGCTTATGACATTGCAAACCATTTCT
GCGAGATGGCTGCAGACTACCATTCAGAAAAGCCTCACATACTGGACTACACTAAATATCCAGATACTGATGAGCAGAAG
CAATTTGTGCAGAGCTACCTGAGCTCTTCAGGCGAGGAACCTGACGCAGAGAAGGTCAATAATCTGATAAAAAGTATCGA
GAAGTACACCTTGGCAAGCCATCTCATTTGGGCCCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis