Browse Element(s) Details


Os.7325.1.S1_at

Description gb:AU100743
DB_XREF= gi:9864993
DB_XREF=AU100743
CLONE=C12627
TID=Os.7325.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7325 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4584010/11GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified
LOC_Os05g45810Os.49658.1.S1_at10/115+26452672..26454595Calcineurin B-like protein 4, putative, expressed
LOC_Os05g45820Os.54943.1.S1_at10/115+26454737..26458707heavy metal-associated domain containing protein, expressed
LOC_Os05g45830Os.18098.1.S1_at11/115+26461396..26468874expressed protein
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein
LOC_Os05g45860Os.51679.1.S1_at11/115+26487164..26490696Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os05g45870Os.53071.1.S1_at11/115+26492407..26495176F-box domain containing protein, expressed
LOC_Os05g45880OsAffx.27333.1.S1_at9/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed
LOC_Os05g45880Os.11760.1.S1_at1/115+26501361..26505096Choline/ethanolamine kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7325.1.S1_at--166--6931NONE
GTAGGAGCTGCCAATTTCCCTTCTT
NONE
Os.7325.1.S1_at--753--3651Chr05:26476119..26476143 (25 bp)
CTTCTTTGTCTTCCATGCGAGGAGC
LOC_Os05g45840
Os.7325.1.S1_at--141--7691Chr05:26476156..26476180 (25 bp)
GGGTAGTACTTCAATGCTGCCGCGT
LOC_Os05g45840
Os.7325.1.S1_at--1077--4651Chr05:26476177..26476201 (25 bp)
GCGTGCTCCATTCACAGGATTTGTT
LOC_Os05g45840
Os.7325.1.S1_at--501--3151Chr05:26476225..26476249 (25 bp)
AATTCTGCCACCAATGACGACGAAC
LOC_Os05g45840
Os.7325.1.S1_at--787--3431Chr05:26476403..26476427 (25 bp)
CAGATGCAGAATGCCAGTTTCCCCA
LOC_Os05g45840
Os.7325.1.S1_at--47--10292Chr05:26476420..26476444 (25 bp)
TTTCCCCATCAACCAAAGTCATTTG
LOC_Os05g45840
Os.7325.1.S1_at--28--1171Chr05:26476436..26476460 (25 bp)
AGTCATTTGCCCCAAGTTGGTGGAA
LOC_Os05g45840
Os.7325.1.S1_at--268--10371Chr05:26476469..26476493 (25 bp)
TTTTAACACTTTTCTGATGCCTCCT
LOC_Os05g45840
Os.7325.1.S1_at--782--10211Chr05:26476573..26476597 (25 bp)
TATTGCCCTGCATTTCTAATACCGA
LOC_Os05g45840
Os.7325.1.S1_at--1012--7911Chr05:26476701..26476725 (25 bp)
GGTTGTATATTGTATCAGCACTCCA
LOC_Os05g45840
Target Sequence 
GTAGGAGCTGCCAATTTCCCTTCTTTGTCTTCCATGCGAGGAGCNTTACCGCATACGGGTAGTACTTCAATGCTGCCGCG
TGCTCCATTCACAGGATTTGTTAATTCTGATCTGATAACTCCACAAATTCTGCCACCAATGACGACGAACAACCATCAGT
TCATNGTCCAACAACATGATGTTAAGGTTACACATCAGATGCAGAATGCCAGTTTCCCCATCAACCAAAGTCATTTGCCC
CAAGTTGGTGGAAACCCNTTTTTTTAACACTTTTCTGATGCCTCCTGTGTNTAGCTGNGTATTTTAAGCAATCTTATGTC
AAGTGTAAGTGTTATGGAAATAGTAAACAATGGAAGAGTGAAGCATATTGCCCTGCATTTCTAATACCGAAATGGCAAGA
AATAGCCAATCGAGTTCTTGTGTGACATCCAAAATGTAAAACCCAGATAGTACTGTAAATTGAATTCAGTTTTAGTCTCT
CNNTAGGGGATGTGGTTGTATATTGTATCAGCACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis