Browse Element(s) Details


Os.54943.1.S1_at

Description gb:AK107145.1
DB_XREF= gi:32992354
TID=Os.54943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D07, full insert sequence.
FL= gb:AK107145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4582010/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45779Os.52811.1.S1_at1/115+26430139..26431761hypothetical protein
LOC_Os05g45790NANA5+26440552..26443857retrotransposon protein, putative, unclassified
LOC_Os05g45800Os.56089.1.S1_at1/115+26444472..26450624retrotransposon protein, putative, unclassified
LOC_Os05g45810Os.49658.1.S1_at10/115+26452672..26454595Calcineurin B-like protein 4, putative, expressed
LOC_Os05g45820Os.54943.1.S1_at10/115+26454737..26458707heavy metal-associated domain containing protein, expressed
LOC_Os05g45830Os.18098.1.S1_at11/115+26461396..26468874expressed protein
LOC_Os05g45840Os.7325.1.S1_at10/115+26471741..26476763GTPase activating protein, putative, expressed
LOC_Os05g45850NANA5+26477844..26480492expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54943.1.S1_at--547--1591Chr05:26455168..26455192 (25 bp)
AGCTCCATATGCATACATGCCACGG
LOC_Os05g45820
Os.54943.1.S1_at--427--1931Chr05:26455147..26455171 (25 bp)
ACGGTAATCTAAGGCTGACGCGTTA
LOC_Os05g45820
Os.54943.1.S1_at--549--5791Chr05:26455131..26455155 (25 bp)
GACGCGTTAGTCAATCAAGCTACGT
LOC_Os05g45820
Os.54943.1.S1_at--920--1551Chr05:26455114..26455138 (25 bp)
AGCTACGTTTGAATTTTCACGGCGA
LOC_Os05g45820
Os.54943.1.S1_at--1030--10511Chr05:26455099..26455123 (25 bp)
TTCACGGCGATCTATATTGGCACTA
LOC_Os05g45820
Os.54943.1.S1_at--454--912Chr09:988339..988523 (25 bp)
AGGCTGTTTGGTATGTACTCCCTCT
NONE
Os.54943.1.S1_at--620--9891Chr05:26454882..26454906 (25 bp)
TACTACTTTATAGCTTGTGTGGAAA
LOC_Os05g45820
Os.54943.1.S1_at--890--10331Chr05:26454817..26454841 (25 bp)
TTTACGAGATTTTCTGTGCTCCAAA
LOC_Os05g45820
Os.54943.1.S1_at--1065--10591Chr05:26454806..26454830 (25 bp)
TTCTGTGCTCCAAATAGGCTTGTAA
LOC_Os05g45820
Os.54943.1.S1_at--590--2071Chr05:26454781..26454805 (25 bp)
ACATTGTACTACTCGTGTTCTGAAA
LOC_Os05g45820
Os.54943.1.S1_at--17--2411NONE
AAACATTGTACTGTTTGCTTTGCAA
NONE
Target Sequence 
AGCTCCATATGCATACATGCCACGGTAATCTAAGGCTGACGCGTTAGTCAATCAAGCTACGTTTGAATTTTCACGGCGAT
CTATATTGGCACTAGGAATAATGAAGAGGGAATTATAACTACTAGAGGCTGTTTGGTATGTACTCCCTCTGTCCCTTAAA
AAATCAATCTAGTATCGGATGTAACACATCCTAATACTACAAATCTACTATCAGATTCGTAGTACTAGAATATGTTACAT
CCGATACTAGATTTGTTTTCTGTGCAACGGAGAGAGTATGTGGATATACTACTTTATAGCTTGTGTGGAAAATGAATTGT
TTCATGGGGAAGGTGAAGGTTTCTGCAGAATTTTACGAGATTTTCTGTGCTCCAAATAGGCTTGTAAACATTGTACTACT
CGTGTTCTGAAAAAAAAACATTGTACTGTTTGCTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis