Browse Element(s) Details


Os.4771.1.S1_at

Description gb:AK071833.1
DB_XREF= gi:32981856
TID=Os.4771.1
CNT=64
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4771 (NCBI UniGene Cluster)
UG_TITLE=MRNA for voltage-dependent anion channel (VDAC2 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121K13, full insert sequence.
FL= gb:AK071833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4595011/11Outer mitochondrial membrane protein porin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45980OsAffx.15119.1.S1_at11/115+26568273..26571379hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4771.1.S1_at--239--611Chr05:26547729..26547753 (25 bp)
ATGCCCTGGATGAACTCACTACTGT
LOC_Os05g45950
Os.4771.1.S1_at--1071--6151Chr05:26547839..26547863 (25 bp)
GAGGTTGATACCAAGGCCATCGACA
LOC_Os05g45950
Os.4771.1.S1_at--1057--2891Chr05:26547904..26547928 (25 bp)
AAGGTCGCCTGCTTTTTCTGGTTTG
LOC_Os05g45950
Os.4771.1.S1_at--491--10451Chr05:26547985..26548009 (25 bp)
TTAACTTTGGTTGCCTCTAGCCTGT
LOC_Os05g45950
Os.4771.1.S1_at--697--9991Chr05:26548002..26548026 (25 bp)
TAGCCTGTTCTAGACTACATGAGGG
LOC_Os05g45950
Os.4771.1.S1_at--356--6131Chr05:26548022..26548046 (25 bp)
GAGGGTTTCTGTTACCAGTCAATCT
LOC_Os05g45950
Os.4771.1.S1_at--14--1131Chr05:26548038..26548062 (25 bp)
AGTCAATCTGTCTCGGTTTCTTTTT
LOC_Os05g45950
Os.4771.1.S1_at--386--6831Chr05:26548053..26548077 (25 bp)
GTTTCTTTTTGGTCATTTGCGGGCA
LOC_Os05g45950
Os.4771.1.S1_at--639--3511Chr05:26548092..26548116 (25 bp)
CATGTCCCGGAATCTGAGTGTCAAA
LOC_Os05g45950
Os.4771.1.S1_at--1051--7751Chr05:26548133..26548157 (25 bp)
GGTCACGTACTTCAAAGTTCACCCT
LOC_Os05g45950
Os.4771.1.S1_at--900--6231Chr05:26548246..26548270 (25 bp)
GATGGCATATATCTGCTGCTTATAA
LOC_Os05g45950
Target Sequence 
ATGCCCTGGATGAACTCACTACTGTGAAGGCGCGCTTCAACAACTTTGGCATGGCCAGTGCGCTCATCCAGCACGAGTTC
AGGCCCAAGTCGCTCGTCACCATCTCCACTGAGGTTGATACCAAGGCCATCGACAAGAGCTCCAAGGTTGGGCTGTCCCT
GGTCCTCAAGCCTTGAAGGTCGCCTGCTTTTTCTGGTTTGGTTTAGGATGCTAGCTTTTGATATCAGCAGCTCATTGAAC
AAAACTTGTAATCGGCTTAACTTTGGTTGCCTCTAGCCTGTTCTAGACTACATGAGGGTTTCTGTTACCAGTCAATCTGT
CTCGGTTTCTTTTTGGTCATTTGCGGGCATATTGATGGGAAAACATGTCCCGGAATCTGAGTGTCAAAACTCTTGGGTGA
AATTGGTCACGTACTTCAAAGTTCACCCTCTGAATCCAGCTGCAGATACTTCTGTTTGATTCAAAACCATATTTCTTCTC
TAACTAGGCTACTTTGAATTCATCTTGTTCATCATAAGATGGCATATATCTGCTGCTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis