Browse Element(s) Details


OsAffx.15119.1.S1_at

Description tigr:9633.m04312
TID=OsAffx.15119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4598011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45980OsAffx.15119.1.S1_at11/115+26568273..26571379hypothetical protein
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46010Os.14919.1.S1_at4/115+26586138..26590038hypothetical protein
LOC_Os05g46010OsAffx.29313.1.S1_at1/115+26586138..26590038hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15119.1.S1_at--487--8951Chr05:26570383..26570407 (25 bp)
TGACTCTCCATTTTCTTATGACGGG
LOC_Os05g45980
OsAffx.15119.1.S1_at--781--7631Chr05:26570486..26570509 (24 bp)
GGGACCATCTCCTCACAATATTAAA
LOC_Os05g45980
OsAffx.15119.1.S1_at--688--6971Chr05:26570996..26571020 (25 bp)
GTACCAGCACAGGATCTCAAGTCAC
LOC_Os05g45980
OsAffx.15119.1.S1_at--587--2871Chr05:26571055..26571079 (25 bp)
AAGGGTGCCTGTGCCACTTGAAGAA
LOC_Os05g45980
OsAffx.15119.1.S1_at--805--8991Chr05:26571073..26571097 (25 bp)
TGAAGAACATGTCCCTCTTCAGCTA
LOC_Os05g45980
OsAffx.15119.1.S1_at--720--1571Chr05:26571093..26571117 (25 bp)
AGCTACATGTAGTTGCGCCTCTGCT
LOC_Os05g45980
OsAffx.15119.1.S1_at--1077--2712Chr12:9002711..9003231 (25 bp)
AAGCAGCCCAAGCAGTTCAGGAGCT
NONE
OsAffx.15119.1.S1_at--251--1751Chr05:26571193..26571217 (25 bp)
ACCTCTTCCAGATGTACCAGTGCAG
LOC_Os05g45980
OsAffx.15119.1.S1_at--192--971Chr05:26571254..26571278 (25 bp)
AGGAGCCGGCAAAGTCTGCTGACTT
LOC_Os05g45980
OsAffx.15119.1.S1_at--883--9111Chr05:26571285..26571309 (25 bp)
TGCTGAAGGCTCTCCAGGTGATGAA
LOC_Os05g45980
OsAffx.15119.1.S1_at--474--1371Chr05:26571311..26571335 (25 bp)
AGACCGGCTCTATCAACGTTTCAAG
LOC_Os05g45980
Target Sequence 
TGACTCTCCATTTTCTTATGACGGGGACCATCTCCTCACAATATTAAATGCTGATGCTAAACCTAGTTCAAGTGAAGCTG
AAGGTATGCAAAAACAAAAGGCTGAAGGCCAAGTACCAGCACAGGATCTCAAGTCACTGCTTACGCCTCACCCAAAGCTC
CGTCGCACGCCAAGGGTGCCTGTGCCACTTGAAGAACATGTCCCTCTTCAGCTACATGTAGTTGCGCCTCTGCTTCTAGT
ACCACCCGCTGGTGCACCACCTCCAATGGCCCAAGCAGCCCAAGCAGTTCAGGAGCTGCCTGCTCCACTACCTCTTCCAG
ATGTACCAGTGCAGGCTGGTTCGCCACCGACCATGATCAGCCAGTTCAACAGGAGCCGGCAAAGTCTGCTGACTTCTACA
ATGCTGAAGGCTCTCCAGGTGATGAAGAGACCGGCTCTATCAACGTTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis