Browse Element(s) Details


Os.54962.1.S1_at

Description gb:AK107196.1
DB_XREF= gi:32992405
TID=Os.54962.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A09, full insert sequence.
FL= gb:AK107196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4599010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45980OsAffx.15119.1.S1_at11/115+26568273..26571379hypothetical protein
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46010Os.14919.1.S1_at4/115+26586138..26590038hypothetical protein
LOC_Os05g46010OsAffx.29313.1.S1_at1/115+26586138..26590038hypothetical protein
LOC_Os05g46020Os.8961.1.S1_s_at11/115+26599203..26600883WRKY DNA binding domain containing protein, expressed
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54962.1.S1_at--821--8351NONE
GGCGGCGGGTTCTCATGGCATCATC
NONE
Os.54962.1.S1_at--758--9471Chr05:26576802..26576826 (25 bp)
TCTGCACAACTATCGCTTGGAGGAG
LOC_Os05g45990
Os.54962.1.S1_at--774--311Chr05:26576739..26576763 (25 bp)
ATACTTTGTGAAGCTCGTCGTCGGA
LOC_Os05g45990
Os.54962.1.S1_at--45--9171Chr05:26576701..26576725 (25 bp)
TGCGCCATGTCTCCATTTTCAAGGG
LOC_Os05g45990
Os.54962.1.S1_at--616--411Chr05:26576579..26576603 (25 bp)
ATCATGGATGCGGTCTCTTGCTCAA
LOC_Os05g45990
Os.54962.1.S1_at--203--9591Chr05:26576564..26576588 (25 bp)
TCTTGCTCAACGGATCATCTCCAAA
LOC_Os05g45990
Os.54962.1.S1_at--540--7911Chr05:26576531..26576555 (25 bp)
GGTTGATTCACCCATGTAGTAGTTA
LOC_Os05g45990
Os.54962.1.S1_at--1025--9751Chr05:26576506..26576530 (25 bp)
TAATCAGCATTAGCCATTAGGCCAA
LOC_Os05g45990
Os.54962.1.S1_at--93--10191Chr05:26576444..26576468 (25 bp)
TATTTAGAGTAAGTGGCCCGGTGAA
LOC_Os05g45990
Os.54962.1.S1_at--640--9771Chr05:26576389..26576413 (25 bp)
TAATGTATTTGCTGAACCTCGTGTT
LOC_Os05g45990
Os.54962.1.S1_at--1018--5431Chr05:26576376..26576400 (25 bp)
GAACCTCGTGTTCAGCAGTGTGTGA
LOC_Os05g45990
Target Sequence 
GGCGGCGGGTTCTCATGGCATCATCCCACCGTTCCTCTGCACAACTATCGCTTGGAGGAGTTCGCCATGGCTGGCTTTGG
AGGGACAGTGAGTCAGGTATACTTTGTGAAGCTCGTCGTCGGAGCGTGCACCGCGCTGCGCCATGTCTCCATTTTCAAGG
GAGGGGATCTGAAGTACAAGGGAAATTGGGACTGGGAGATGCCGAGGTTGCAGGAGAATTCGTGGAATGACAAGGAGAAA
GAAACCATGGAGAAGCAGATCATGGATGCGGTCTCTTGCTCAACGGATCATCTCCAAATAGTTCTAGGTTGATTCACCCA
TGTAGTAGTTATAATCAGCATTAGCCATTAGGCCAACCGATGGCAGCAATAATTTATCATGTTCACTTAATTTTATTTAG
AGTAAGTGGCCCGGTGAAAAATTTAATTTGTAATCTCTTTTACTCGAATAATGTATTTGCTGAACCTCGTGTTCAGCAGT
GTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis