Browse Element(s) Details


Os.54425.1.S1_at

Description gb:AK105140.1
DB_XREF= gi:32990349
TID=Os.54425.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H02, full insert sequence.
FL= gb:AK105140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4600011/11Ras-related protein Rab7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45980OsAffx.15119.1.S1_at11/115+26568273..26571379hypothetical protein
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46010Os.14919.1.S1_at4/115+26586138..26590038hypothetical protein
LOC_Os05g46010OsAffx.29313.1.S1_at1/115+26586138..26590038hypothetical protein
LOC_Os05g46020Os.8961.1.S1_s_at11/115+26599203..26600883WRKY DNA binding domain containing protein, expressed
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54425.1.S1_at--352--7551Chr05:26582114..26582138 (25 bp)
GTGGCGTTCTACAGAGGTGCAGATT
LOC_Os05g46000
Os.54425.1.S1_at--378--4731Chr05:26582139..26582163 (25 bp)
GCTGTATGCTAGTCTACGATGTCAA
LOC_Os05g46000
Os.54425.1.S1_at--365--1291Chr05:26582572..26582596 (25 bp)
AGATCCCAAACATTTTCCCTTCATA
LOC_Os05g46000
Os.54425.1.S1_at--707--10631Chr05:26582586..26582610 (25 bp)
TTCCCTTCATATTACTCGGCAACAA
LOC_Os05g46000
Os.54425.1.S1_at--35--2411Chr05:26582629..26582783 (25 bp)
AAACAGACGTGCCATCCCTGAGAAG
LOC_Os05g46000
Os.54425.1.S1_at--71--2791Chr05:26582791..26582815 (25 bp)
AAGAGTGGTGCGTCTCCAAAGGCAA
LOC_Os05g46000
Os.54425.1.S1_at--1076--2071Chr05:26582815..26582839 (25 bp)
ACATTCCGTATTTCGAAACCTCTGC
LOC_Os05g46000
Os.54425.1.S1_at--669--2511Chr05:26583068..26583092 (25 bp)
AACATACCAGCGGATGTGCTTGCTA
LOC_Os05g46000
Os.54425.1.S1_at--398--7331Chr05:26583083..26583107 (25 bp)
GTGCTTGCTAGCACTTTGGATGCTT
LOC_Os05g46000
Os.54425.1.S1_at--246--7991Chr05:26583100..26583124 (25 bp)
GGATGCTTTTGTTCATTGGCTGAGA
LOC_Os05g46000
Os.54425.1.S1_at--186--2571Chr05:26583185..26583209 (25 bp)
AACTGTTACTCGCTTGTGTATCCAT
LOC_Os05g46000
Target Sequence 
GTGGCGTTCTACAGAGGTGCAGATTGCTGTATGCTAGTCTACGATGTCAATGCTAAAAGATCTTTCAATGCACTCAACAC
CTGGCATGATGAGTTCCTCACCCAAGCTAGCCCATCAGATCCCAAACATTTTCCCTTCATATTACTCGGCAACAAGATTG
ACATAGATGCCGGAAACAGACGTGCCATCCCTGAGAAGAAAGCAAAAGAGTGGTGCGTCTCCAAAGGCAACATTCCGTAT
TTCGAAACCTCTGCGAAAGANGACTACAATGTTGACAGTGCTTTTCTGTGCATTGCCAAGCTTGCTCTGGAGCATGAGCA
TGATCAGGACATCTACTTCAAGACTGTTGCACAACCAGCCCCTGATACTGAACATACCAGCGGATGTGCTTGCTAGCACT
TTGGATGCTTTTGTTCATTGGCTGAGAATGAAATTATACAATTATAAGTTGTTATGGACTCACAGTGTACAATAAGCTCG
CATAAGAAACTGTTACTCGCTTGTGTATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis