Browse Element(s) Details


Os.49671.1.S1_at

Description gb:AK101945.1
DB_XREF= gi:32987154
TID=Os.49671.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074L17, full insert sequence.
FL= gb:AK101945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3800011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37960OsAffx.27215.1.S1_at11/115+22188572..22190439hypothetical protein
LOC_Os05g37970Os.5299.2.S1_a_at11/115+22193096..22195540universal stress protein family protein, expressed
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49671.1.S1_at--172--2811Chr05:22213497..22213521 (25 bp)
AAGATCTCTTGCATGCCGGCCATGT
LOC_Os05g38000
Os.49671.1.S1_at--612--571Chr05:22213631..22213655 (25 bp)
ATCCAACATCGGGAGGGCACTGCTG
LOC_Os05g38000
Os.49671.1.S1_at--348--871Chr05:22213713..22213737 (25 bp)
ATGGCGGTCAGCAACGCCGTGTTCG
LOC_Os05g38000
Os.49671.1.S1_at--218--9971Chr05:22213741..22213765 (25 bp)
TACCGGGCCTGTGAATCGATCGATC
LOC_Os05g38000
Os.49671.1.S1_at--675--10471Chr05:22213791..22213815 (25 bp)
TTACCCTCGCCTGTGTGCAGTAGTT
LOC_Os05g38000
Os.49671.1.S1_at--890--4211Chr05:22213880..22213904 (25 bp)
CCGCCCTCCAGTTTTATGATGTGTT
LOC_Os05g38000
Os.49671.1.S1_at--896--8871Chr05:22213896..22213920 (25 bp)
TGATGTGTTTTGACAGTGCCTTTGT
LOC_Os05g38000
Os.49671.1.S1_at--644--5651Chr05:22213907..22213931 (25 bp)
GACAGTGCCTTTGTTAACTTGCTAG
LOC_Os05g38000
Os.49671.1.S1_at--949--1331Chr05:22213939..22213963 (25 bp)
AGAGTGCTTAAGTTCGATGTTGGTC
LOC_Os05g38000
Os.49671.1.S1_at--640--5971Chr05:22213975..22213999 (25 bp)
GAGAACCATCGCGTTTGTGCAAACC
LOC_Os05g38000
Os.49671.1.S1_at--669--5131Chr05:22213993..22214017 (25 bp)
GCAAACCACAGAGTTTTCTTGGCTG
LOC_Os05g38000
Target Sequence 
AAGATCTCTTGCATGCCGGCCATGTCGGCGTCGTCGGTGCCGGCGTACCCGGTGGTGTCCACCTCGGGCACCCCGCCGCC
GTACGCGACGGCGTACGCCACGCCGAGCTTCTCGCCGGCGCANCTGTCNGAGCCCATCCAACATCGGGAGGGCACTGCTG
GTCGACCGGCGGTNNCACGACGGCCGAGCGTTCGACGGCAGCATGGAGTTCATGGGGATGGCGGTCAGCAACGCCGTGTT
CGACCTACCGGGCCTGTGAATCGATCGATCACNGGNCCCGTGTCTANTNGCTTTACTTACCCTCGCCTGTGTGCAGTAGT
TNNNNNTNNTGTATGGCGTGATTTCTTCTCNGGANGGCGGCCTGTTTTTGCCGTTTCGCCGTTTCGCCGCCCTCCAGTTT
TATGATGTGTTTTGACAGTGCCTTTGTTAACTTGCTAGTGTTGTAAGAGTGCTTAAGTTCGATGTTGGTCGGATGGCAAA
AGAGAACCATCGCGTTTGTGCAAACCACAGAGTTTTCTTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis