Browse Element(s) Details


Os.49678.1.S1_at

Description gb:AK059252.1
DB_XREF= gi:32969270
TID=Os.49678.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H04, full insert sequence.
FL= gb:AK059252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3916011/11Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39110Os.14150.1.S1_at11/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.16870.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.19796.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39120Os.22969.1.S1_at11/1112+24032752..24036050protein phosphatase 2C family protein, putative, expressed
LOC_Os12g39130NANA12+24038325..24038936expressed protein
LOC_Os12g39140NANA12+24040447..24041136hypothetical protein
LOC_Os12g39150Os.35344.18.S1_x_at10/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150Os.35344.3.S1_x_at10/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150OsAffx.22940.5.S1_x_at3/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39150OsAffx.828.1.S1_x_at1/1112+24043286..24049028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39160Os.49678.1.S1_at11/1112+24053641..24056428Lipase, putative, expressed
LOC_Os12g39170OsAffx.20023.1.S1_at10/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39170Os.20341.1.S1_s_at1/1112+24075037..24081156Serine carboxypeptidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49678.1.S1_at--717--5211Chr12:24054155..24054179 (25 bp)
GAATTCACATGGTCTTCCATATCCC
LOC_Os12g39160
Os.49678.1.S1_at--4--251Chr12:24054137..24054161 (25 bp)
ATATCCCTGAGGAGGCCTATTGTGA
LOC_Os12g39160
Os.49678.1.S1_at--786--5431Chr12:24054111..24054135 (25 bp)
GAACCCTTACCTATCTTATTCAGAT
LOC_Os12g39160
Os.49678.1.S1_at--1137--10371Chr12:24054046..24054070 (25 bp)
TTTTGTCGGTGCCTTGTGGAAGAAC
LOC_Os12g39160
Os.49678.1.S1_at--207--7791Chr12:24053966..24053990 (25 bp)
GGTGCTGTTCTTTCTCTTATAGCGA
LOC_Os12g39160
Os.49678.1.S1_at--61--6471Chr12:24053943..24053967 (25 bp)
GATACTAATTTATCGGAGCCCAGCG
LOC_Os12g39160
Os.49678.1.S1_at--1112--4991Chr12:24053866..24053890 (25 bp)
GCAGTCCAGTGTGCTTTTGGTTGGT
LOC_Os12g39160
Os.49678.1.S1_at--942--7911Chr12:24053848..24053872 (25 bp)
GGTTGGTGATAGTCTCCGGTCAAAA
LOC_Os12g39160
Os.49678.1.S1_at--394--5211Chr12:24053794..24053818 (25 bp)
GAATTGCTGTTGCTCTTTGTTTAGG
LOC_Os12g39160
Os.49678.1.S1_at--298--10151Chr12:24053767..24053791 (25 bp)
TATCATGATGGGTCTCTGGTTGTTT
LOC_Os12g39160
Os.49678.1.S1_at--466--10671Chr12:24053730..24053754 (25 bp)
TTCCTTCACATCTCTCTTTATTTAG
LOC_Os12g39160
Target Sequence 
GAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTA
GGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCAC
CCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGG
AAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGT
CTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGNTATCATGATGGG
TCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis