Browse Element(s) Details


Os.49682.1.S1_at

Description gb:AK107164.1
DB_XREF= gi:32992373
TID=Os.49682.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F06, full insert sequence.
FL= gb:AK107164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1947011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19430NANA2+11352154..11352673hypothetical protein
LOC_Os02g19440Os.9791.1.S1_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440Os.9791.1.S1_x_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440OsAffx.24325.1.S1_at10/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19460OsAffx.24242.5.S1_x_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.24242.5.S1_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.29326.1.S1_at1/112+11368560..11370492hypothetical protein
LOC_Os02g19470Os.49682.1.S1_at11/112+11376715..11379300expressed protein
LOC_Os02g19480NANA2+11385464..11386500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19499NANA2+11393058..11393214NA
LOC_Os02g19510Os.7757.1.S1_at11/112+11399631..11404041expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49682.1.S1_at--648--9031Chr02:11377136..11377160 (25 bp)
TGCACGGTGCGAGGCTTTGGACACA
LOC_Os02g19470
Os.49682.1.S1_at--367--5631Chr02:11377117..11377141 (25 bp)
GACACAGCTGATGGTGATCCCGGAC
LOC_Os02g19470
Os.49682.1.S1_at--672--1291Chr02:11377088..11377112 (25 bp)
AGATGACGTGGAAGCTCCTGGCCAG
LOC_Os02g19470
Os.49682.1.S1_at--662--3171Chr02:11376892..11376916 (25 bp)
AATTGGCACCACTGTATATCGGTCA
LOC_Os02g19470
Os.49682.1.S1_at--654--251Chr02:11376877..11376901 (25 bp)
ATATCGGTCATTATATTCCTCCTTA
LOC_Os02g19470
Os.49682.1.S1_at--640--10671Chr02:11376862..11376886 (25 bp)
TTCCTCCTTATTGCTGCTATATTTA
LOC_Os02g19470
Os.49682.1.S1_at--1065--7391Chr02:11376834..11376858 (25 bp)
GTGTTCCTCCTTATTACTGTTGTAT
LOC_Os02g19470
Os.49682.1.S1_at--296--1971Chr02:11376819..11376843 (25 bp)
ACTGTTGTATTTTGTGTCCGCTGAG
LOC_Os02g19470
Os.49682.1.S1_at--943--7231Chr02:11376804..11376828 (25 bp)
GTCCGCTGAGTACTTCTGTTTTTGA
LOC_Os02g19470
Os.49682.1.S1_at--858--731Chr02:11376774..11376798 (25 bp)
ATGTTCATGTTTGTTTTGGTGCTCA
LOC_Os02g19470
Os.49682.1.S1_at--97--6011Chr02:11376723..11376747 (25 bp)
GAGACCTTAATTCTAGCTCAAGCAA
LOC_Os02g19470
Target Sequence 
TGCACGGTGCGAGGCTTTGGACACAGCTGATGGTGATCCCGGACCAGGAGATGACGTGGAAGCTCCTGGCCAGGGTGTGG
GCGGAGCTGATGCTGTTCGTCACCCCGGCGGACAATGCGACGGCGCACGTCCAGCATTTGACGATGGGCGGCGAGCACAT
TACCCACCTCTGGGCACTGCTGACACACGCTGGCATCGTCGACCGGCCTAATTCTCCGTCCCCACACCCACATCCGGCGC
CGTAAATTGGCACCACTGTATATCGGTCATTATATTCCTCCTTATTGCTGCTATATTTAATTGTGTTCCTCCTTATTACT
GTTGTATTTTGTGTCCGCTGAGTACTTCTGTTTTTGAGTTAAATGTTCATGTTTGTTTTGGTGCTCAGTTAGCTTTAATT
TGGTGTCTTAGTAGAGACCTTAATTCTAGCTCAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis