Browse Element(s) Details


Os.49694.1.S1_at

Description gb:AK067797.1
DB_XREF= gi:32977815
TID=Os.49694.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116D11, full insert sequence.
FL= gb:AK100408.1 gb:AK067797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6237011/11WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os04g209303/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62314OsAffx.8801.1.S1_at2/113+35243125..35248319retrotransposon protein, putative, LINE subclass
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein
LOC_Os03g62400OsAffx.25796.1.S1_at10/113+35284103..35287960pentatricopeptide, putative
LOC_Os03g62410Os.52881.1.S1_at11/113+35289129..35293830Phospholipase D gamma 3, putative, expressed
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49694.1.S1_at--515--152Chr03:35272915..35272939 (25 bp)
ATTACCAGCCATACGGCGAGATCTT
LOC_Os03g62370
Os.49694.1.S1_at--709--5652Chr03:35272947..35272971 (25 bp)
GACATCGACGGGTCCAACATCCGGC
LOC_Os03g62370
Os.49694.1.S1_at--526--7192Chr03:35273006..35273030 (25 bp)
GTCGTGGACGCCATACTTCCTGGAG
LOC_Os03g62370
Os.49694.1.S1_at--1146--2651Chr03:35273056..35273080 (25 bp)
AAGCCTCGGGCAGGTGCGCGTTCCA
LOC_Os03g62370
Os.49694.1.S1_at--590--10692Chr03:35273084..35273108 (25 bp)
TTGCCACTGGCTCAACATCCAAGAT
LOC_Os03g62370
Os.49694.1.S1_at--578--571Chr03:35273100..35273124 (25 bp)
ATCCAAGATGCTGCCCAACCTGAAG
LOC_Os03g62370
Os.49694.1.S1_at--594--4552Chr03:35273112..35273136 (25 bp)
GCCCAACCTGAAGAGCTCAACTATG
LOC_Os03g62370
Os.49694.1.S1_at--986--5891Chr03:35273141..35273165 (25 bp)
GAGCTGCTGAGTGAAGCCATGGCAC
LOC_Os03g62370
Os.49694.1.S1_at--365--8251Chr03:35273161..35273185 (25 bp)
GGCACTGGCTGATCACGCTGAATTA
LOC_Os03g62370
Os.49694.1.S1_at--1000--1271Chr03:35273265..35273289 (25 bp)
AGATCATGTACACTGATGCCATCTT
LOC_Os03g62370
Os.49694.1.S1_at--1041--6351Chr03:35273279..35273303 (25 bp)
GATGCCATCTTCAGGGCAAACGATA
LOC_Os03g62370
Target Sequence 
ATTACCAGCCATACGGCGAGATCTTCACCGTCGACATCGACGGGTCCAACATCCGGCGGCTCACGCACAACTCGTTCGAG
GACGGCACGCCGTCGTGGACGCCATACTTCCTGGAGCCCCGAGACGTCGGCGAGACGCTGCAAGCCTCGGGCAGGTGCGC
GTTCCAGGATTGCCACTGGCTCAACATCCAAGATGCTGCCCAACCTGAAGAGCTCAACTATGGCAAGAGCTGCTGAGTGA
AGCCATGGCACTGGCTGATCACGCTGAATTAAGCCAATAAACCATGGATATTGGAGTGCATGAATGTAGATATAATACTG
TTATGTAGTAGCATGAATCTACCAGGAATAAGATCATGTACACTGATGCCATCTTCAGGGCAAACGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis