Browse Element(s) Details


Os.49707.1.S1_at

Description gb:AK105426.1
DB_XREF= gi:32990635
TID=Os.49707.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C11, full insert sequence.
FL= gb:AK102730.1 gb:AK105426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4900011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48970Os.8912.1.S1_at11/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48970Os.50339.1.S1_at1/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48980Os.53495.1.S1_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48980Os.53495.1.S1_x_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein
LOC_Os06g49010Os.11215.1.S1_a_at10/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49010OsAffx.2442.1.S1_x_at1/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49707.1.S1_at--564--1611Chr06:29701664..29701688 (25 bp)
AGCTGAGGCAGAGCATGGCCGACCC
LOC_Os06g49000
Os.49707.1.S1_at--529--4711Chr06:29701900..29701924 (25 bp)
GCGGCCTAGCGCATCTGTATTAGTA
LOC_Os06g49000
Os.49707.1.S1_at--602--8771Chr06:29701915..29701939 (25 bp)
TGTATTAGTACTACACTCCAGCTAA
LOC_Os06g49000
Os.49707.1.S1_at--552--7011Chr06:29701922..29701946 (25 bp)
GTACTACACTCCAGCTAACCTGTTG
LOC_Os06g49000
Os.49707.1.S1_at--166--9811Chr06:29701937..29701961 (25 bp)
TAACCTGTTGCTTGTACTACCTCGA
LOC_Os06g49000
Os.49707.1.S1_at--875--6991Chr06:29701950..29701974 (25 bp)
GTACTACCTCGATTGGTGAACAGAG
LOC_Os06g49000
Os.49707.1.S1_at--441--8311Chr06:29702077..29702101 (25 bp)
GGCTATGATTGAAACTTATCCTTTG
LOC_Os06g49000
Os.49707.1.S1_at--644--9792Chr06:29702107..29702131 (25 bp)
TAAGAAATCATATTCCAAACCCATT
LOC_Os06g49000
Os.49707.1.S1_at--1092--71Chr06:29702118..29702142 (25 bp)
ATTCCAAACCCATTATCCAAACATG
LOC_Os06g49000
Os.49707.1.S1_at--926--3491Chr06:29702139..29702163 (25 bp)
CATGGCCTATGTGATTGTTAGCTCA
LOC_Os06g49000
Os.49707.1.S1_at--444--6771Chr06:29702155..29702179 (25 bp)
GTTAGCTCAGGAACAAAACGTTCAG
LOC_Os06g49000
Target Sequence 
AGCTGAGGCAGAGCATGGCCGACCCGGGGAGGAGGTGGAGGGTGGTGTGCGAGGTGTGGGTGGAGATGCTGGGCTACGCG
GCGGTGCACTGCGGAGGGTACCAGCACGCGGAGCGGCTCAAGGACGGCGGCGAGCTCATCACCTTCGTCTGCCTCCTCAT
GACCCACCTCGGCATGGGGAAGCACTACCGGACCGAGGTTGGGGATGCCTACGCCCACCTCTCGCCCTACAGCGCCGCGG
CCTAGCGCATCTGTATTAGTACTACACTCCAGCTAACCTGTTGCTTGTACTACCTCGATTGGTGAACAGAGTTTGATAAT
ATATGGGTGTGTTTGGATAATGGGTTAGGAGAGGTGGGATTGGGAAATAGAAATGATGGAGGGATAAGATGAAATGGAGT
GAGAAGAATGGATGGCTATGATTGAAACTTATCCTTTGAGGGGTAAGAAATCATATTCCAAACCCATTATCCAAACATGG
CCTATGTGATTGTTAGCTCAGGAACAAAACGTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis