Browse Element(s) Details


Os.49709.1.S1_at

Description gb:AK100431.1
DB_XREF= gi:32985640
TID=Os.49709.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088H12, full insert sequence.
FL= gb:AK100431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1403010/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14060OsAffx.19542.3.S1_x_at6/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060OsAffx.21754.1.S1_x_at1/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49709.1.S1_at--121--2991Chr03:7590495..7590519 (25 bp)
AATGATTATGAACGCACTCGGCCGT
LOC_Os03g14030
Os.49709.1.S1_at--42--8771Chr03:7590468..7590492 (25 bp)
TGTTTCCCGGGCTCTAATCGTAGTG
LOC_Os03g14030
Os.49709.1.S1_at--768--8131Chr03:7590393..7590417 (25 bp)
GGACAGATACCTGCCACGTTATTAC
LOC_Os03g14030
Os.49709.1.S1_at--785--6791Chr03:7590376..7590400 (25 bp)
GTTATTACAGCTCTAACCCACTTGT
LOC_Os03g14030
Os.49709.1.S1_at--947--8951Chr03:7590327..7590351 (25 bp)
TACAGTTTTCGTAGACGTGGCCGTC
LOC_Os03g14030
Os.49709.1.S1_at--1038--10211Chr03:7590298..7590322 (25 bp)
TATTGCTGCCACTCTACTACAGAAG
LOC_Os03g14030
Os.49709.1.S1_at--101--1451Chr03:7590278..7590302 (25 bp)
AGAAGACTCGACCTATGGCTACACT
LOC_Os03g14030
Os.49709.1.S1_at--197--8151Chr03:7590243..7590267 (25 bp)
GGACACGTATGCTCAATGTTTTCTT
LOC_Os03g14030
Os.49709.1.S1_at--272--10571Chr03:7590217..7590241 (25 bp)
TTCTTCTCATTTTTTGCCGCTGATG
LOC_Os03g14030
Os.49709.1.S1_at--347--3531Chr03:7590169..7590193 (25 bp)
CATGCATAGTGATTCCATACCCCAA
LOC_Os03g14030
Os.49709.1.S1_at--78--6471NONE
GATAATGGCCTAGGTGTCTGCACGG
NONE
Target Sequence 
AATGATTATGAACGCACTCGGCCGTCCTGTTTCCCGGGCTCTAATCGTAGTGGCGAACCAACTAACATGATCACGGTTGG
TTGACATCGTTGTTAACGCACTGGACAGATACCTGCCACGTTATTACAGCTCTAACCCACTTGTACTATCAATATGGCTG
CATACCCCTACAGTTTTCGTAGACGTGGCCGTCCCATTATTGCTGCCACTCTACTACAGAAGACTCGACCTATGGCTACA
CTACAAGTACTAGGACACGTATGCTCAATGTTTTCTTTTTCTTCTCATTTTTTGCCGCTGATGATTGATTGCTAGCAAGG
TAGCTTCATGCATAGTGATTCCATACCCCAATCAAAGTACCAAACCTCTGAAAGGAACTAATGGCATGATAATGGCCTAG
GTGTCTGCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis