Browse Element(s) Details


Os.49721.1.S1_at

Description gb:AK121446.1
DB_XREF= gi:37991069
TID=Os.49721.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141H19, full insert sequence.
FL= gb:AK121446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3622011/11Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g362642/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36210Os.27751.1.S1_at6/112+21835195..21841696Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os02g36220Os.49721.1.S1_at11/112+21847712..21857723Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36220OsAffx.24594.1.S1_at1/112+21847712..21857723Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36230Os.14919.1.S1_at2/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36230OsAffx.15585.1.S1_at1/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36230OsAffx.29313.1.S1_at1/112+21861613..21863711transposon protein, putative, Mutator sub-class
LOC_Os02g36239NANA2+21873425..21873643NA
LOC_Os02g36250OsAffx.29972.1.S1_x_at2/112+21879210..21879506hypothetical protein
LOC_Os02g36264OsAffx.24594.1.S1_at11/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36264Os.49721.1.S1_at2/112+21880635..21893361Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49721.1.S1_at--1003--292Chr02:21880930..21880954 (25 bp)
ATAGCGTCATGTTGCATGCTCTTTC
LOC_Os02g36264
Os.49721.1.S1_at--64--8691Chr02:21848118..21848142 (25 bp)
TGTGACCTCCTAAGGCTGGTGACTA
LOC_Os02g36220
Os.49721.1.S1_at--452--7911Chr02:21848083..21848107 (25 bp)
GGTTGTTCCTCCACCGTGCAGGAAG
LOC_Os02g36220
Os.49721.1.S1_at--734--3751Chr02:21848058..21848082 (25 bp)
CTCTTCTGGTTCATGAGCAAGGTTT
LOC_Os02g36220
Os.49721.1.S1_at--935--1471Chr02:21848043..21848067 (25 bp)
AGCAAGGTTTTGCACTTCGTCTACA
LOC_Os02g36220
Os.49721.1.S1_at--173--2871Chr02:21848013..21848037 (25 bp)
AAGGACGGGTATTTCACGGCCGATG
LOC_Os02g36220
Os.49721.1.S1_at--646--7412Chr02:21880667..21880691 (25 bp)
GTGATTCTTGATCCCCTGCAAGTGA
LOC_Os02g36264
Os.49721.1.S1_at--1070--2851Chr02:21847946..21847970 (25 bp)
AAGTGACACTTCTTCCATCTGGTTT
LOC_Os02g36220
Os.49721.1.S1_at--1058--471Chr02:21847930..21847954 (25 bp)
ATCTGGTTTGGGAACGCTGTGACCA
LOC_Os02g36220
Os.49721.1.S1_at--605--211Chr02:21847892..21847916 (25 bp)
ATTTGTACTGTGTTAAGCTGCCTGA
LOC_Os02g36220
Os.49721.1.S1_at--211--4811Chr02:21847856..21847880 (25 bp)
GCTCGTGTAGCTTTCCTGCAAATTA
LOC_Os02g36220
Target Sequence 
ATAGCGTCATGTTGCATGCTCTTTCCCACAGCGGCNGCGGCCGCGGCTCACCCGGAGGCATCGATGGAGGAGGNCAAGAG
AGAGATGAGGAGGGTTCTCCAGGGTAGTAGGTGTGACCTCCTAAGGCTGGTGACTAGAGATGGGGGGGTTGTTCCTCCAC
CGTGCAGGAAGCTCTTCTGGTTCATGAGCAAGGTTTTGCACTTCGTCTACATGGAAAAGGACGGGTATTTCACGGCCGAT
GGGATGATGGCATCAGCAAATGCGGTGATTCTTGATCCCCTGCAAGTGACACTTCTTCCATCTGGTTTGGGAACGCTGTG
ACCAAACAAAACCTGAAATTTGTACTGTGTTAAGCTGCCTGAAAGTGTTTATTGCTCGTGTAGCTTTCCTGCAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis