Browse Element(s) Details


Os.49728.1.S1_at

Description gb:AK102217.1
DB_XREF= gi:32987426
TID=Os.49728.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087L07, full insert sequence.
FL= gb:AK102217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0155011/11F-box domain containing protein, expressed
LOC_Os02g015304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01580NANA2+327500..330456retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49728.1.S1_at--623--1251Chr02:312076..312100 (25 bp)
AGATTCTTCCGCACATTTGAGGCAG
LOC_Os02g01550
Os.49728.1.S1_at--796--6411Chr02:312013..312037 (25 bp)
GATCATAGGGTTCAACTCCGCGAAG
LOC_Os02g01550
Os.49728.1.S1_at--642--731Chr02:311971..311995 (25 bp)
ATGTTGCATTGTCAAAGCCGCTGCC
LOC_Os02g01550
Os.49728.1.S1_at--598--2052Chr02:311944..311968 (25 bp)
ACTTGAGCGTCTTGTGTTGGACACA
LOC_Os02g01550
Os.49728.1.S1_at--158--6512Chr02:311878..311902 (25 bp)
GATTTGCTGGCCTGTTAGCAACGCT
LOC_Os02g01550
Os.49728.1.S1_at--216--2612Chr02:311859..311883 (25 bp)
AACGCTGTGCTCAAGGAATCCGCAA
LOC_Os02g01550
Os.49728.1.S1_at--362--1372Chr02:311835..311859 (25 bp)
AGAGCTGCCATTGCTGTACGAAGGT
LOC_Os02g01550
Os.49728.1.S1_at--460--1731Chr02:311791..311815 (25 bp)
ACCTACAACAACTCTGACTCTTGTG
LOC_Os02g01550
Os.49728.1.S1_at--245--10871Chr02:311735..311759 (25 bp)
TTGGATGATCCCTATGCTGCTGGAA
LOC_Os02g01550
Os.49728.1.S1_at--737--9011Chr02:311570..311594 (25 bp)
TGCACAATGTTGTCGCTTTAATCAA
LOC_Os02g01550
Os.49728.1.S1_at--319--6471Chr02:311539..311563 (25 bp)
GATAAACCATGCTTTGTTTCTTGGA
LOC_Os02g01550
Target Sequence 
AGATTCTTCCGCACATTTGAGGCAGCTGCCCGAGCTCAGCCATGAATGCCTGAAGAGTGTGGAGATCATAGGGTTCAACT
CCGCGAAGAGCTTGGTTGAGCTAACATGTTGCATTGTCAAAGCCGCTGCCTCACTTGAGCGTCTTGTGTTGGACACACTT
AGAGGTGGTGATAGGTGTTCTGGGGAAAGTAATGGGAAGATTTGCTGGCCTGTTAGCAACGCTGTGCTCAAGGAATCCGC
AAGAGCTGCCATTGCTGTACGAAGGTACATCGAGGATAAAGTTGCACCTACAACAACTCTGACTCTTGTGGGGACTTGCA
CACGCTGTCATTCCCTTGCCTTTGGATGATCCCTATGCTGCTGGAAGGTGGAAGATGTCATAACTTATCTTAGTTGTGAT
ATGTATTTCAATAAATGATAGTATATGTTAGTCATAAGATCTTTGTAGTTTCATCTTTAACTATCCCTTATTATTTTCTT
AAGACTATGCGATAAGCTATCTGAAATGCACAATGTTGTCGCTTTAATCAAATTATAGATAAACCATGCTTTGTTTCTTG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis