Browse Element(s) Details


Os.49731.1.S1_s_at

Description gb:AK060405.1
DB_XREF= gi:32970423
TID=Os.49731.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D04, full insert sequence.
FL= gb:AK060405.1 gb:AK104437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2192011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21890Os.27961.1.S1_at11/112+13014483..13015520expressed protein
LOC_Os02g21900OsAffx.24378.1.S1_at10/112+13025539..1302657940S ribosomal protein S7, putative
LOC_Os02g21910OsAffx.2713.1.S1_at11/112+13027546..13030044hypothetical protein
LOC_Os02g21920Os.17019.1.A1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21920Os.49731.1.S1_s_at11/112+13039009..13040248senescence-associated protein, putative, expressed
LOC_Os02g21930OsAffx.2714.1.S1_at11/112+13042344..13042744hypothetical protein
LOC_Os02g21950OsAffx.31869.4.S1_at5/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.4.S1_x_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_at3/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.5.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21950OsAffx.31869.3.S1_x_at2/112+13049262..13049837retrotransposon protein, putative, unclassified
LOC_Os02g21960NANA2+13056046..13057224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21970Os.11446.1.S1_at10/112+13059121..1306384826S protease regulatory subunit 6B homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49731.1.S1_s_at--1050--4611Chr02:13039623..13039647 (25 bp)
GCGAGGGCCGCATGCCTCTGCTCGG
LOC_Os02g21920
Os.49731.1.S1_s_at--380--9071Chr02:13039668..13039692 (25 bp)
TGCTTTACACCGCCAACGGCGGATC
LOC_Os02g21920
Os.49731.1.S1_s_at--70--9191Chr02:13039831..13039855 (25 bp)
TGCCGGAGCTTCCTGCTCTGGCAGA
LOC_Os02g21920
Os.49731.1.S1_s_at--110--4271Chr02:13039833..13039857 (25 bp)
CCGGAGCTTCCTGCTCTGGCAGAAG
LOC_Os02g21920
Os.49731.1.S1_s_at--842--4231Chr02:13040005..13040029 (25 bp)
CCGATGCCTCCGTAATCCGGATCGA
LOC_Os02g21920
Os.49731.1.S1_s_at--1081--9411Chr02:13040082..13040106 (25 bp)
TCGGGTTGCGCGTAATAATTCGACG
LOC_Os02g21920
Os.49731.1.S1_s_at--281--4571Chr02:13040089..13040113 (25 bp)
GCGCGTAATAATTCGACGATGCTTC
LOC_Os02g21920
Os.49731.1.S1_s_at--714--351Chr02:13040096..13040120 (25 bp)
ATAATTCGACGATGCTTCTTTTTCA
LOC_Os02g21920
Os.49731.1.S1_s_at--480--451Chr02:13040164..13040188 (25 bp)
ATCTAGTCGCATTTTCTCGTCCTGT
LOC_Os02g21920
Os.49731.1.S1_s_at--301--3711Chr02:13040166..13040190 (25 bp)
CTAGTCGCATTTTCTCGTCCTGTTG
LOC_Os02g21920
Os.49731.1.S1_s_at--159--7231Chr02:13040169..13040193 (25 bp)
GTCGCATTTTCTCGTCCTGTTGCAA
LOC_Os02g21920
Target Sequence 
GCGAGGGCCGCATGCCTCTGCTCGGNGCCGACGCCGCCGGCTTCCTGCTTTACACCGCCAACGGCGGATCCGACGCGCTC
AGCGCCGACGAGAAGATCTACTTCAACGGCTGCCGGAGCTTCCTGCTCTGGCAGAAGGCGGCGCGCGACACCATGGCCAA
GGGCGGCCGGCCTGAGCTGGCGAATGTCGCGACCTGCAATCCCTGCAAGAAACGGGGCGGCGGCGGCTGGAAGGGCGGCC
TGAACAAGTTCCTCCTCAGCTTCAGCTTCAAGGTGTGAGAGCCACCGATGCCTCCGTAATCCGGATCGAGCTGATCTCCT
CCTGCCGGAATCGTTGTCCCCGAGTTCATCACTACAGCTGGTCGGGTTGCGCGTAATAATTCGACGATGCTTCTTTTTCA
GTCGTCAGTGTCAGTTGCTTGGTTATTTCGTTCAGTTTTGTCAATCTAGTCGCATTTTCTCGTCCTGTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49731.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis