Browse Element(s) Details


Os.49745.1.S1_at

Description gb:AB125311.1
DB_XREF= gi:46917347
GEN=SAPK10
TID=Os.49745.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49745 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK10 mRNA for serinethreonine protein kinase SAPK10, complete cds.
PROD=serinethreonine protein kinase SAPK10
FL= gb:AK100538.1 gb:AB125311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4146011/11Serine/threonine-protein kinase SAPK9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os03g41530Os.49515.2.S1_x_at11/113+23047775..23050994Single-strand binding protein family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49745.1.S1_at--94--1331Chr03:23023899..23023923 (25 bp)
AGAGGCGACCATACCAGCAGCTGGG
LOC_Os03g41460
Os.49745.1.S1_at--674--5271Chr03:23023851..23023875 (25 bp)
GAATGATGGCCTTGACCTCGATGAT
LOC_Os03g41460
Os.49745.1.S1_at--195--9611Chr03:23023808..23023832 (25 bp)
TCAGACCCCGATCTTGACGTGGAAA
LOC_Os03g41460
Os.49745.1.S1_at--361--1251Chr03:23023726..23023750 (25 bp)
AGATTGCTTGTCAGTTGCCCGCGAA
LOC_Os03g41460
Os.49745.1.S1_at--527--9171Chr03:23023711..23023735 (25 bp)
TGCCCGCGAATTGGTTTGTTGTATT
LOC_Os03g41460
Os.49745.1.S1_at--969--2431Chr03:23023618..23023642 (25 bp)
AAAAGTTCGGTTGCCTATGCTGTTT
LOC_Os03g41460
Os.49745.1.S1_at--149--10211Chr03:23023594..23023618 (25 bp)
TATTATGCCTGATGATCCCTGTTGT
LOC_Os03g41460
Os.49745.1.S1_at--1100--9531Chr03:23023496..23023520 (25 bp)
TCTTTGCTCCCCTTAACTGAGGGAA
LOC_Os03g41460
Os.49745.1.S1_at--341--4831Chr03:23023405..23023429 (25 bp)
GCTCAGTACACGAACTTGTTTCCAT
LOC_Os03g41460
Os.49745.1.S1_at--675--10291Chr03:23023387..23023411 (25 bp)
TTTCCATTTTCAAAGCACCATCTGC
LOC_Os03g41460
Os.49745.1.S1_at--523--471Chr03:23023368..23023392 (25 bp)
ATCTGCACTGCACGTCATTAATTTT
LOC_Os03g41460
Target Sequence 
AGAGGCGACCATACCAGCAGCTGGGTCTGGTGGAATCAACCAGTTCTTGAATGATGGCCTTGACCTCGATGATGACATGG
AGGNCCTTGATTCAGACCCCGATCTTGACGTGGAAAGCNGTGGGGAGATAGTATACGCTATGTGATGCTGTGAATTCTAG
CAAGCAGACAGGCAGATTGCTTGTCAGTTGCCCGCGAATTGGTTTGTTGTATTACAGTCACAGATGACAAAGNTGGCCAA
GAAACTGGGAAGTGGATACATGTGTCAAGAGTACATCACAAAAAAGTTCGGTTGCCTATGCTGTTTATTATGCCTGATGA
TCCCTGTTGTCTCCTGTTTTGTCGCCGTTGATTTGTGTATTGGAGTGTCCTAGATCTCGTTTTGAGAACTGTTTGGAACC
TTGTCTTTGCTCCCCTTAACTGAGGGAAAGCGATGTAGTGGTAGTAGTAGTAGTAGTAGCAGCGTGAAGACTGAATAAGA
GATGCCCCCAGTAAGCTCAGTACACGAACTTGTTTCCATTTTCAAAGCACCATCTGCACTGCACGTCATTAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis