Browse Element(s) Details

Os.49775.1.S1_at

Description

gb:AY429017.1
DB_XREF= gi:40388418
GEN=AID1
TID=Os.49775.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49775 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
PROD=ANTHER INDEHISCENCE1
FL= gb:AY429017.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08290	9/11	terminal acidic SANT 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08240	OsAffx.15307.1.S1_at	9/11	6	+	3989606..3992035	hypothetical protein
LOC_Os06g08250	OsAffx.27507.1.S1_at	10/11	6	+	3992929..3995160	hypothetical protein
LOC_Os06g08270	OsAffx.15308.1.S1_at	11/11	6	+	4003935..4004619	hypothetical protein
LOC_Os06g08280	Os.53574.1.S1_at	11/11	6	+	4007140..4012540	Protein kinase domain containing protein, expressed
LOC_Os06g08280	Os.37872.1.S1_at	11/11	6	+	4007140..4012540	Protein kinase domain containing protein, expressed
LOC_Os06g08290	Os.49775.1.S1_at	9/11	6	+	4015075..4018297	terminal acidic SANT 1, putative, expressed
LOC_Os06g08300	OsAffx.4765.1.S1_s_at	3/11	6	+	4018886..4021127	FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310	Os.8093.2.S1_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	Os.8093.1.S1_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	Os.8093.2.S1_x_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	OsAffx.5813.1.S1_x_at	2/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320	Os.12267.2.S1_s_at	11/11	6	+	4032490..4033175	60S ribosomal protein L39, putative, expressed
LOC_Os06g08320	Os.46185.1.S1_x_at	1/11	6	+	4032490..4033175	60S ribosomal protein L39, putative, expressed
LOC_Os06g08329	NA	NA	6	+	4035587..4035761	NA
LOC_Os06g08340	Os.55579.1.S1_at	11/11	6	+	4039785..4040764	AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49775.1.S1_at--212--675	1	Chr06:4017475..4017499 (25 bp)	GTTCACCGATACATAGACCGCAGTT	LOC_Os06g08290
Os.49775.1.S1_at--543--581	1	Chr06:4017490..4017514 (25 bp)	GACCGCAGTTGCCTAGCCCAAGGAG	LOC_Os06g08290
Os.49775.1.S1_at--582--143	1	Chr06:4017513..4017537 (25 bp)	AGAACAACATTTTCTCCTCTGCAAC	LOC_Os06g08290
Os.49775.1.S1_at--688--901	1	Chr06:4017532..4017556 (25 bp)	TGCAACCGGCAGATAACAAAGCGAA	LOC_Os06g08290
Os.49775.1.S1_at--1080--869	1	Chr06:4017611..4017794 (25 bp)	TGTCGAACAGTATGGTAACGGCAAT	LOC_Os06g08290
Os.49775.1.S1_at--673--19	1	Chr06:4018121..4018145 (25 bp)	ATTTCTTTTTGTGCTCCACCGACAT	LOC_Os06g08290
Os.49775.1.S1_at--81--285	1	NONE	AAGTCATGGTTTTAAGCTCCCCTTG	NONE
Os.49775.1.S1_at--373--269	1	NONE	AAGCTCCCCTTGTAATTTGGAACAG	NONE
Os.49775.1.S1_at--538--11	1	Chr06:4018235..4018259 (25 bp)	ATTCTGAATTTCTGGTGCTGTATGT	LOC_Os06g08290
Os.49775.1.S1_at--201--779	1	Chr06:4018248..4018272 (25 bp)	GGTGCTGTATGTATTCATTCAGTGA	LOC_Os06g08290
Os.49775.1.S1_at--759--595	1	Chr06:4018271..4018295 (25 bp)	GAGAATCTGTATCCAGCTTTTGCTG	LOC_Os06g08290

Target Sequence

GTTCACCGATACATAGACCGCAGTTGCCTAGCCCAAGGAGAACAACATTTTCTCCTCTGCAACCGGCAGATAACAAAGCG
AAGCGTAGAAAGGCAAGGAAGTGGTGCGCGTTAGAAGAGGAAACATTAAGAAAGGGTGTCGAACAGTATGGTAACGGCAA
TTGGAAAGATATTTTAACCAACAATCCTGATGTTTTTATTGGTCGAAAAGCGATGGACTTGAAAGATAAGTGGAGAAACA
TGATGAGGTAGGGATCAATGACAAGGCACCAGAGAGAGTTCTCTTTCATTCTAGCTGAAGAACCTTTAAGAAGCCCTAGG
GCATATAATTCTGGTGGTTCGATACGCTGAAGCACCAAGCCCTTCTACTGCTGAAGACTGAGGAGCAGTTGGGTTTGATG
CATTTCTTTTTGTGCTCCACCGACATATCCCCAGTAGATTCGGGCGAGAATTCGTCAGATTAGTACCAGATGCTTACAAG
TCATGGTTTTAAGCTCCCCTTGTAATTTGGAACAGATTCTGAATTTCTGGTGCTGTATGTATTCATTCAGTGAGAATCTG
TATCCAGCTTTTGCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis