Browse Element(s) Details


Os.49804.1.S1_at

Description gb:AK111652.1
DB_XREF= gi:37988315
TID=Os.49804.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134B12, full insert sequence.
FL= gb:AK111652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4731010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47269NANA11+27870072..27870466NA
LOC_Os11g47278OsAffx.31525.1.S1_at11/1111+27871699..27872374hypothetical protein
LOC_Os11g47290Os.51998.1.S1_at9/1111+27872882..27880052Leucine Rich Repeat family protein
LOC_Os11g47300OsAffx.19418.1.S1_at11/1111+27885956..27889389Leucine Rich Repeat family protein
LOC_Os11g47310Os.49804.1.S1_at10/1111+27892823..27896499Protein kinase domain containing protein, expressed
LOC_Os11g47320Os.11506.1.S1_at11/1111+27903697..27911397expressed protein
LOC_Os11g47330Os.8026.1.S1_at11/1111+27916046..27919616ATP-citrate synthase, putative, expressed
LOC_Os11g47339NANA11+27920797..27921526NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49804.1.S1_at--368--3091Chr11:27893315..27893339 (25 bp)
AATAATGCTACTCGAGGTGTTCACT
LOC_Os11g47310
Os.49804.1.S1_at--531--9851Chr11:27893279..27893303 (25 bp)
TACAGATCCCATGTTCATTGGTGGA
LOC_Os11g47310
Os.49804.1.S1_at--695--31Chr11:27893263..27893287 (25 bp)
ATTGGTGGATTGACCCTGAGGCTGT
LOC_Os11g47310
Os.49804.1.S1_at--359--7491Chr11:27893240..27893264 (25 bp)
GTGGGTTTCTCAATCATTTCCTAAG
LOC_Os11g47310
Os.49804.1.S1_at--723--8871Chr11:27893207..27893231 (25 bp)
TGATGTTGCCGATGAGCACCTACTG
LOC_Os11g47310
Os.49804.1.S1_at--346--10851Chr11:27893137..27893161 (25 bp)
TTGGGATCTTCTTCGACTAGCAGGA
LOC_Os11g47310
Os.49804.1.S1_at--1106--9811Chr11:27893111..27893135 (25 bp)
TAACAGCTTCCTTACGTCGATATTT
LOC_Os11g47310
Os.49804.1.S1_at--322--1571Chr11:27893085..27893109 (25 bp)
AGCTAGGCCTGTTGTGTTCGAGTGA
LOC_Os11g47310
Os.49804.1.S1_at--864--6211Chr11:27892970..27892994 (25 bp)
GAGGCGTCGGCAATACTAGATCAAC
LOC_Os11g47310
Os.49804.1.S1_at--388--671Chr11:27892890..27892914 (25 bp)
ATGAAATTGGCCGTCCATCCTTTGG
LOC_Os11g47310
Os.49804.1.S1_at--1065--311Chr11:27892823..27892847 (25 bp)
ATACGGCAGTGCATATGCGTTTTCC
NONE
Target Sequence 
AATAATGCTACTCGAGGTGTTCACTGGGAAGAGGCCTACAGATCCCATGTTCATTGGTGGATTGACCCTGAGGCTGTGGG
TTTCTCAATCATTTCCTAAGAATCTTATTGATGTTGCCGATGAGCACCTACTGCAAGACGAAGAAACACGTCTTTGTTTT
GATTACCAGAACACTTCATTGGGATCTTCTTCGACTAGCAGGAGTAACAGCTTCCTTACGTCGATATTTGAGCTAGGCCT
GTTGTGTTCGAGTGAGTCACCTGAGCAGAGGATGGCTATGAACGATGTAGTTTCAAAGCTGAAAGGGATCAAGAAAGATT
ACTCTGCATCTATGCTGGAAATGCAGAGGCGTCGGCAATACTAGATCAACCATGTGTCGATGTAATTAACTCTGTAAATT
TTTCTTTGCTTTTCTTTGTTCCTTAATGAAATTGGCCGTCCATCCTTTGGCCGGCCTGGCAAAAAAATACTAGATCAACC
AGTCTATAATATATACGGCAGTGCATATGCGTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis