Browse Element(s) Details


Os.49806.1.S1_at

Description gb:AK111661.1
DB_XREF= gi:37988324
TID=Os.49806.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153B06, full insert sequence.
FL= gb:AK111661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43920OsAffx.6128.1.S1_at1/118+27548463..27549170hypothetical protein
LOC_Os08g43930OsAffx.6128.1.S1_at2/118+27550163..27550930expressed protein
LOC_Os08g43940OsAffx.6128.1.S1_at1/118+27551952..27552656hypothetical protein
LOC_Os08g43950OsAffx.17507.1.S1_at11/118+27553575..27554741hypothetical protein
LOC_Os08g43960NANA8+27557211..27557927expressed protein
LOC_Os08g43970NANA8+27559188..27559916hypothetical protein
LOC_Os08g43980NANA8+27561131..27561862hypothetical protein
LOC_Os08g44000Os.11934.1.S1_at11/118+27562341..27567438expressed protein
LOC_Os08g44000Os.11934.1.S2_at11/118+27562341..27567438expressed protein
LOC_Os08g44010Os.49806.1.S1_at11/118+27570560..27574386expressed protein
LOC_Os08g44010Os.49806.2.S1_x_at10/118+27570560..27574386expressed protein
LOC_Os08g44020Os.50320.1.S1_at11/118+27581198..27585830LG27/30-like gene, putative, expressed
LOC_Os08g44030OsAffx.29653.1.S1_at11/118+27587099..27587425hypothetical protein
LOC_Os08g44040Os.50320.1.S1_at4/118+27591651..27598426LG27/30-like gene, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49806.1.S1_at--945--6911Chr08:27573833..27573857 (25 bp)
GTATGTTGTTGATGCGATTACCAAT
LOC_Os08g44010
Os.49806.1.S1_at--987--6331Chr08:27573843..27573867 (25 bp)
GATGCGATTACCAATAGTACCTTCT
LOC_Os08g44010
Os.49806.1.S1_at--570--6551Chr08:27573848..27573872 (25 bp)
GATTACCAATAGTACCTTCTCTTGT
LOC_Os08g44010
Os.49806.1.S1_at--240--1191Chr08:27573858..27573882 (25 bp)
AGTACCTTCTCTTGTTCTAACAGAC
LOC_Os08g44010
Os.49806.1.S1_at--743--1731Chr08:27573861..27573885 (25 bp)
ACCTTCTCTTGTTCTAACAGACCTT
LOC_Os08g44010
Os.49806.1.S1_at--204--8791Chr08:27573870..27573894 (25 bp)
TGTTCTAACAGACCTTCCCTTTTCT
LOC_Os08g44010
Os.49806.1.S1_at--937--1731Chr08:27573881..27573905 (25 bp)
ACCTTCCCTTTTCTGCTCAAGCAGA
LOC_Os08g44010
Os.49806.1.S1_at--304--9491Chr08:27573892..27573916 (25 bp)
TCTGCTCAAGCAGACTTGTTTGTTG
LOC_Os08g44010
Os.49806.1.S1_at--837--1511Chr08:27573900..27573924 (25 bp)
AGCAGACTTGTTTGTTGTGCATATT
LOC_Os08g44010
Os.49806.1.S1_at--1077--3571Chr08:27573919..27573943 (25 bp)
CATATTATTGGTGTTGTAGATTTTC
LOC_Os08g44010
Os.49806.1.S1_at--1081--9471Chr08:27574357..27574381 (25 bp)
TTCAGGGAATGAGCAAATTAACTTC
LOC_Os08g44010
Target Sequence 
GTATGTTGTTGATGCGATTACCAATAGTACCTTCTCTTGTTCTAACAGACCTTCCCTTTTCTGCTCAAGCAGACTTGTTT
GTTGTGCATATTATTGGTGTTGTAGATTTTCTCCTTGCCATCCTATATACTGTACTCTGGTACATGGAGTTGATGCGATG
GCCTGATTCGACAGCTTGTGACCCCAGAACAATAGCAAGCCAATAATGTTTCAGTAACCATCTTGGCAGAAATCCAGTGT
CTCATATGATCTGCCACTCTTGTGATTCAGGCCAGCTGTAATTGCAAAATTCAGCCTGGTACAATTGCCAAATACTGCTC
CNCGAGTGATTCTTGAATGTCATATATCTGAGAAAGGTTGGTGTCAATTGTTGCGTTATGTGGTGAAGTACAACCGATCT
GAATTTTGTAGAACTGTTGAGATTGACAAGATCTGAGCTTCTGTTTTTCATTCGATTTTTCACTGTATGAGTGGTTCCCT
TACTTTAGCAAAGATTAATATTTCGTCTGTATGTTACAAAATCATTCAGGGAATGAGCAAATTAACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis