Browse Element(s) Details


Os.49809.1.S1_x_at

Description gb:AK111693.1
DB_XREF= gi:37988356
TID=Os.49809.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004E13, full insert sequence.
FL= gb:AK111693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2159011/11Phosphatidylinositol 3-kinase, root isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g21530OsAffx.17096.1.S1_at11/118+12824503..12824934hypothetical protein
LOC_Os08g21540NANA8+12825911..12826333hypothetical protein
LOC_Os08g21554OsAffx.29296.1.S1_at10/118+12833246..12835701hypothetical protein
LOC_Os08g21570OsAffx.17097.1.S1_at11/118+12837551..12841490pentatricopeptide, putative, expressed
LOC_Os08g21580Os.3640.1.S1_at7/118+12841566..1284530025.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g21580OsAffx.25746.1.S1_x_at1/118+12841566..1284530025.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g21590Os.49809.1.S1_x_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.1.S1_at11/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.19018.2.S1_at10/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.48015.1.A1_x_at2/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.53292.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21590Os.38764.1.S1_x_at1/118+12849326..12869308Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os08g21630NANA8+12878597..12879270hypothetical protein
LOC_Os08g21650OsAffx.29297.1.S1_at11/118+12890422..12890983hypothetical protein
LOC_Os08g21650OsAffx.24626.1.S1_x_at1/118+12890422..12890983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49809.1.S1_x_at--985--9111Chr08:12852986..12853010 (25 bp)
TGCTGGCTACAGTGTCATTACATAC
LOC_Os08g21590
Os.49809.1.S1_x_at--932--5971Chr08:12851591..12851871 (25 bp)
GAGACAGGCATCTTGACAACCTTCT
LOC_Os08g21590
Os.49809.1.S1_x_at--842--2211Chr08:12851576..12851600 (25 bp)
ACAACCTTCTCCTACAAGACGATGG
LOC_Os08g21590
Os.49809.1.S1_x_at--936--5691Chr08:12851549..12851573 (25 bp)
GACTTTTCCATGTTGACTTCTCGTA
LOC_Os08g21590
Os.49809.1.S1_x_at--219--8171Chr08:12851515..12851539 (25 bp)
GGAACAACCACATCGATTTGCACCA
LOC_Os08g21590
Os.49809.1.S1_x_at--390--2811Chr08:12851330..12851354 (25 bp)
AAGATTCAAGTCCTACTGTTGCGAG
LOC_Os08g21590
Os.49809.1.S1_x_at--1048--10411Chr08:12851293..12851317 (25 bp)
TTACGAAAGTCCAGCAACCTCATAC
LOC_Os08g21590
Os.49809.1.S1_x_at--575--6331Chr08:12849938..12849962 (25 bp)
GATGCTATACATTTTCTCCAGGGTC
LOC_Os08g21590
Os.49809.1.S1_x_at--227--2331Chr08:12849904..12849928 (25 bp)
AAAGTATCAGTGCTTTCTTCCCTCA
LOC_Os08g21590
Os.49809.1.S1_x_at--88--2871Chr08:12849859..12849883 (25 bp)
AATGGGCACAGTCTAGGCGTTAAAA
LOC_Os08g21590
Os.49809.1.S1_x_at--1095--5311Chr08:12849777..12849801 (25 bp)
GAAGTTCTTTTCTGTTACGGTGACA
LOC_Os08g21590
Target Sequence 
TGCTGGCTACAGTGTCATTACATACATACTGGGGATTGGAGACAGGCATCTTGACAACCTTCTCCTACAAGACGATGGAA
GACTTTTCCATGTTGACTTCTCGTATATGCTTGGGGAACAACCACATCGATTTGCACCACCATCACCACCGATGAAATTA
TGCAAAGAAATGGTTGAGGCCATGGGTGGTACTGAAAGTGAATACTATGCAAGATTCAAGTCCTACTGTTGCGAGGCATA
CAACATATTACGAAAGTCCAGCAACCTCATACTGAATCTTTTTTATCTGATGACTGGATCAAATATTGAGAGTATCACAG
ACAAAGGGACTTCTAAGCTACAGCAAAATTTCCGGTTGGATCTAGACGACGAGGATGCTATACATTTTCTCCAGGGTCTT
ATGAACGAAAGTATCAGTGCTTTCTTCCCTCAAGTGGTTGAGACCATCCATCAATGGGCACAGTCTAGGCGTTAAAAACA
TTTATAATATTTGGTCAAGACATTTATAATATTTGGTCTGTACATGTCAGTTTTGAAGTTCTTTTCTGTTACGGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49809.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis