Browse Element(s) Details


Os.49815.1.S1_at

Description gb:AK111724.1
DB_XREF= gi:37988387
TID=Os.49815.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029P03, full insert sequence.
FL= gb:AK111724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2536011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25330Os.51869.1.S1_at1/117+14463871..14470603retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25340OsAffx.22385.1.S1_x_at4/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25340OsAffx.20329.1.S1_at1/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25349NANA7+14479093..14480173NA
LOC_Os07g25360Os.49815.1.S1_at11/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25360Os.53842.1.S1_x_at1/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25370OsAffx.28576.4.S1_at11/117+14500360..14500938Myb-like DNA-binding domain containing protein
LOC_Os07g25380OsAffx.28577.1.S1_at11/117+14501285..14501695hypothetical protein
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49815.1.S1_at--658--4511Chr07:14496940..14496964 (25 bp)
GCCGACGCCGTCACATTGAGGATTG
LOC_Os07g25360
Os.49815.1.S1_at--163--9631Chr07:14496980..14497004 (25 bp)
TCATGCTTAGCAAAAACCCTGTCTT
LOC_Os07g25360
Os.49815.1.S1_at--109--9691Chr07:14497126..14497150 (25 bp)
TCACTCGGACGGGACAGGTTCATGG
LOC_Os07g25360
Os.49815.1.S1_at--790--1011Chr07:14497141..14497165 (25 bp)
AGGTTCATGGAGCTGCGTTCCCAGA
LOC_Os07g25360
Os.49815.1.S1_at--1071--3431Chr07:14497162..14497186 (25 bp)
CAGATTGGCCTCGTCGAAGTTCAAA
LOC_Os07g25360
Os.49815.1.S1_at--145--5331Chr07:14497177..14497201 (25 bp)
GAAGTTCAAACACCGCGCAAGGTTT
LOC_Os07g25360
Os.49815.1.S1_at--156--632Chr07:14497239..14497263 (25 bp)
ATGCTTTGCATTTTTCTCGTTTTTC
LOC_Os07g25360
Os.49815.1.S1_at--196--9513Chr07:14497253..14497277 (25 bp)
TCTCGTTTTTCTGTTGCATTGCATG
LOC_Os07g25360
Os.49815.1.S1_at--923--51Chr07:14497270..14497294 (25 bp)
ATTGCATGCGAGTGAGCTCCGGTTT
LOC_Os07g25360
Os.49815.1.S1_at--607--9631Chr07:14497317..14497341 (25 bp)
TCATGGTGCTGGAATAGCCGCGCGT
LOC_Os07g25360
Os.49815.1.S1_at--264--10392Chr07:14497431..14497455 (25 bp)
TTTTCCTTTGTTGCATCTTCGTTTT
LOC_Os07g25360
Target Sequence 
GCCGACGCCGTCACATTGAGGATTGACAACCAATCTGCCATCATGCTTAGCAAAAACCCTGTCTTCCACGATCGCAGCAA
GCACATCGACACGAGATATCACTACATCAGAGAATGCATTGAGGAGGGCAGGGTGAAGGTCGAGTTCATCGGCACCAACG
AGCAGTTGGCGGATATTCTGACGAAGTCACTCGGACGGGACAGGTTCATGGAGCTGCGTTCCCAGATTGGCCTCGTCGAA
GTTCAAACACCGCGCAAGGTTTAGGGGGAGATTTGTTAGATATAAACCTTGTGCATTTTATGCTTTGCATTTTTCTCGTT
TTTCTGTTGCATTGCATGCGAGTGAGCTCCGGTTTGTGGACGCCGCGCGCGTAGGGGTCATGGTGCTGGAATAGCCGCGC
GTGGCCGAGATCAGCGGGGGCATGCGCACGTCGCGAACTCGTGGGGATGGACGCGAGCGATCCGCGGCGTGGGCCGGTTC
CAGAGCTAGATTTTTCCTTTGTTGCATCTTCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis