Browse Element(s) Details


Os.4982.1.S1_at

Description gb:AK102186.1
DB_XREF= gi:32987395
TID=Os.4982.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for ribosomal protein L9, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086N17, full insert sequence.
FL= gb:AK102186.1 gb:AK062502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0133211/1160S ribosomal protein L9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01280Os.20421.1.S1_at11/112+158674..163732RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os02g01290Os.23805.2.A1_at11/112+163662..164372expressed protein
LOC_Os02g01300OsAffx.11858.1.S1_at11/112+165491..167012Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os02g01310Os.5658.1.S1_at11/112+168442..169528pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g01320OsAffx.11859.1.S1_at11/112+171034..171569hypothetical protein
LOC_Os02g01326Os.23534.1.A1_at11/112+175818..179370Integral membrane protein DUF6 containing protein, expressed
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein
LOC_Os02g01360Os.10177.1.S1_at11/112+205428..207507expressed protein
LOC_Os02g01370OsAffx.24048.1.S1_at9/112+207750..209337hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4982.1.S1_at--894--1051Chr02:182470..182494 (25 bp)
AGGGTGTGACAATTTTGCGTTCTGA
LOC_Os02g01332
Os.4982.1.S1_at--830--691Chr02:182434..182458 (25 bp)
ATGAGCTGGTCCTTGATGGCAATGA
LOC_Os02g01332
Os.4982.1.S1_at--124--2991Chr02:182414..182438 (25 bp)
AATGATATCGAGCTTGTCTCCCGTT
LOC_Os02g01332
Os.4982.1.S1_at--687--6711Chr02:182394..182416 (23 bp)
GTTCTGCGGCACTGATCAACCAGAA
LOC_Os02g01332
Os.4982.1.S1_at--1140--8871Chr02:180589..180613 (25 bp)
TGAGGACCAGTGAGCTGCGTTTCCT
LOC_Os02g01332
Os.4982.1.S1_at--914--4631Chr02:180573..180597 (25 bp)
GCGTTTCCTTACTAGCTGTAGCAAA
LOC_Os02g01332
Os.4982.1.S1_at--886--4731Chr02:180559..180583 (25 bp)
GCTGTAGCAAAACCTGTCCTAGAGA
LOC_Os02g01332
Os.4982.1.S1_at--333--8171Chr02:180524..180548 (25 bp)
GGAACTTTTACTGCTCTGTTTTTGA
LOC_Os02g01332
Os.4982.1.S1_at--787--1531Chr02:180431..180455 (25 bp)
AGCATGTGCTCCTATGGTATCCGTA
LOC_Os02g01332
Os.4982.1.S1_at--272--6251Chr02:180371..180395 (25 bp)
GATGGATCTTTTTTACACCGTTGAA
LOC_Os02g01332
Os.4982.1.S1_at--78--5131Chr02:180339..180363 (25 bp)
GCAACTTGGGTTATTATTATCTCGC
LOC_Os02g01332
Target Sequence 
AGGGTGTGACAATTTTGCGTTCTGAGAAGGTCAAGGATGAGCTGGTCCTTGATGGCAATGATATCGAGCTTGTCTCCCGT
TCTGCGGCACTGATCAACCAGAAATGCCACGTCAAGAACAAGGATATCAGGAAGTTCCTGGATGGCATCTATGTCAGTGA
CAAGGGCACCATCACTGAGGACCAGTGAGCTGCGTTTCCTTACTAGCTGTAGCAAAACCTGTCCTAGAGAGAGTGCACAA
GGAACTTTTACTGCTCTGTTTTTGAGTCAAATTACAAGGTCATTCGACAATGAAATTTTGTACTACTGGGTTAGGATGTT
ATTATGTAATTGGAGCATGTGCTCCTATGGTATCCGTATTGTTTGTGAGAATGTTTCTGTGNCTTATTTCTCTTGATGGA
TCTTTTTTACACCGTTGAAAGAACCTGCAACTTGGGTTATTATTATCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis