Browse Element(s) Details


Os.49826.1.S1_at

Description gb:AK111796.1
DB_XREF= gi:37988459
TID=Os.49826.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103N18, full insert sequence.
FL= gb:AK111796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3179011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA
LOC_Os04g31780OsAffx.14077.1.S1_x_at11/114+18827190..18827928hypothetical protein
LOC_Os04g31790Os.49826.1.S1_at11/114+18833215..18850327expressed protein
LOC_Os04g31790OsAffx.21285.1.S1_at1/114+18833215..18850327expressed protein
LOC_Os04g31804OsAffx.26276.1.S1_at11/114+18855336..18871258SRF-type transcription factor family protein, expressed
LOC_Os04g31820Os.11530.1.S1_at1/114+18874450..18874659hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49826.1.S1_at--1129--8511Chr04:18849922..18849946 (25 bp)
TGGACCTCAACATGCCTTGCTGGGA
LOC_Os04g31790
Os.49826.1.S1_at--90--1491Chr04:18849990..18850014 (25 bp)
AGCAATCTGAGTCTGTCTAACGTTA
LOC_Os04g31790
Os.49826.1.S1_at--52--9811Chr04:18850007..18850031 (25 bp)
TAACGTTAGTCGCTACTACTGTCCC
LOC_Os04g31790
Os.49826.1.S1_at--157--8691Chr04:18850026..18850050 (25 bp)
TGTCCCCGGTACTAACAGTGTCGTA
LOC_Os04g31790
Os.49826.1.S1_at--43--7631Chr04:18850064..18850088 (25 bp)
GGGAAACTACTACTACGCTTTGCTA
LOC_Os04g31790
Os.49826.1.S1_at--1105--9911Chr04:18850098..18850122 (25 bp)
TACTGTAGCCGTTCATATCCAGGAT
LOC_Os04g31790
Os.49826.1.S1_at--1063--10131Chr04:18850113..18850137 (25 bp)
TATCCAGGATACTGTGCCGTAACTG
LOC_Os04g31790
Os.49826.1.S1_at--715--2031Chr04:18850210..18850234 (25 bp)
ACTAGTTCTAGTTCATGTTCGGTGG
LOC_Os04g31790
Os.49826.1.S1_at--1130--10191Chr04:18850265..18850289 (25 bp)
TATTGGTCGATGTGTACCCGTGGGC
LOC_Os04g31790
Os.49826.1.S1_at--798--6971Chr04:18850278..18850302 (25 bp)
GTACCCGTGGGCTCTGTAATAAGAC
LOC_Os04g31790
Os.49826.1.S1_at--803--351Chr04:18850296..18850320 (25 bp)
ATAAGACTGTCCGTGCCTGCAAATT
LOC_Os04g31790
Target Sequence 
TGGACCTCAACATGCCTTGCTGGGACGCAGGTCCTCTGCAGTAAACGTAGATAACATTATCTTTGCACAGCAATCTGAGT
CTGTCTAACGTTAGTCGCTACTACTGTCCCCGGTACTAACAGTGTCGTAAGTTACTGTTGCTGGGAAACTACTACTACGC
TTTGCTAATCTTTTTTTACTGTAGCCGTTCATATCCAGGATACTGTGCCGTAACTGGAGCACACCAGATTCAAATCAAAT
GTACTGTGACACCATTGTATTTTAAAATGTGTTTTTCTCCTACTTCCTACTAGTTCTAGTTCATGTTCGGTGGAAAATTG
TAAACCAAATAAACCGGCATCGGTATTGGTCGATGTGTACCCGTGGGCTCTGTAATAAGACTGTCCGTGCCTGCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis