Browse Element(s) Details


OsAffx.26275.1.S1_at

Description tigr:9632.m03020
TID=OsAffx.26275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3172011/11hypothetical protein
LOC_Os04g288801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA
LOC_Os04g31780OsAffx.14077.1.S1_x_at11/114+18827190..18827928hypothetical protein
LOC_Os04g31790Os.49826.1.S1_at11/114+18833215..18850327expressed protein
LOC_Os04g31790OsAffx.21285.1.S1_at1/114+18833215..18850327expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26275.1.S1_at--69--6131Chr04:18808599..18808623 (25 bp)
GAGTGGGACGCGTACAAGACAAGCC
LOC_Os04g31720
OsAffx.26275.1.S1_at--636--1091Chr04:18808600..18808624 (25 bp)
AGTGGGACGCGTACAAGACAAGCCG
LOC_Os04g31720
OsAffx.26275.1.S1_at--719--4011Chr04:18808656..18808680 (25 bp)
CGTCGCAGTCGCTCGGGCTCGGGCA
LOC_Os04g31720
OsAffx.26275.1.S1_at--227--4011Chr04:18808789..18808813 (25 bp)
CGTCCCTCCAGCGAGACGGCAGCAG
LOC_Os04g31720
OsAffx.26275.1.S1_at--884--4651Chr04:18808834..18808858 (25 bp)
GCGTGACGCCCGAACGAGGCCGCTA
LOC_Os04g31720
OsAffx.26275.1.S1_at--644--873Chr11:21034822..21034843 (22 bp)
AGGCCGCTACGACGGAGACGACCAC
NONE
OsAffx.26275.1.S1_at--962--3931Chr04:18808882..18808906 (25 bp)
CGGCGTCCAGCGTCAGCTCCGTGGA
LOC_Os04g31720
OsAffx.26275.1.S1_at--1045--9651Chr04:18808894..18808918 (25 bp)
TCAGCTCCGTGGACGCTGGCGCCAT
LOC_Os04g31720
OsAffx.26275.1.S1_at--642--4271Chr04:18808976..18809000 (25 bp)
CCTGTTCTCTCTACGGGACGACGAG
LOC_Os04g31720
OsAffx.26275.1.S1_at--609--1911Chr04:18809052..18809076 (25 bp)
ACGGGCAGCATTGGGCGGTTCGTCG
LOC_Os04g31720
OsAffx.26275.1.S1_at--22--4151Chr04:18809126..18809150 (25 bp)
CGCGGCTGTCCTGGAGTTCGCCATG
LOC_Os04g31720
Target Sequence 
GAGTGGGACGCGTACAAGACAAGCCGGTGTTCGGGCGCGTCCCGGCGCCGCCACCACCGTCGCAGTCGCTCGGGCTCGGG
CACCGGCACGCCGTCCTCCGCCGTCATCGTCGCCGCCGAACCCGCGGACGCGCCGGGCAGCCATCTCCTCCTCGGGGTCC
GTCTCGGCGGCTCGCCGAGGCGGCTCGTCTCGTCCCTCCAGCGAGACGGCAGCAGCAGCAGCACGGCCAGCGCCGGCGTG
ACGCCCGAACGAGGCCGCTACGACGGAGACGACCACCACGACGCGGCGTCCAGCGTCAGCTCCGTGGACGCTGGCGCCAT
GGCCGCCATGGCCGCCGCCGCCTCGTCCAACTCCTCCTGCTCCTCCGCAGCCACGTCCCTGTTCTCTCTACGGGACGACG
AGCTCGCCGTGGTCGGCGAGGCGGCCAAAACAGGGGGAACAGCAACGCCGGCGACGGGCAGCATTGGGCGGTTCGTCGCC
GCCATTGCCGCGGCGGGTGTGGTGCTGCTCGTGGCGGCCATCATGGCCGCGGCTGTCCTGGAGTTCGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis