Browse Element(s) Details


Os.8672.1.S1_at

Description gb:AK104891.1
DB_XREF= gi:32990100
TID=Os.8672.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D08, full insert sequence.
FL= gb:AK067193.1 gb:AK104891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3170011/11methylisocitrate lyase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA
LOC_Os04g31780OsAffx.14077.1.S1_x_at11/114+18827190..18827928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8672.1.S1_at--561--5651Chr04:18801376..18801400 (25 bp)
GATAAAAAGTACTGGTGCACCCCGA
LOC_Os04g31700
Os.8672.1.S1_at--695--1551Chr04:18801345..18801369 (25 bp)
AGCTTGCCATCTTTTCAGGAGATCA
LOC_Os04g31700
Os.8672.1.S1_at--695--251Chr04:18801277..18801301 (25 bp)
ATATGCAACAGTCCAGCAAGCCCAG
LOC_Os04g31700
Os.8672.1.S1_at--534--3691Chr04:18800906..18801002 (25 bp)
CTATTCCAGGCTTGGCTGGTGTCAA
LOC_Os04g31700
Os.8672.1.S1_at--609--2451Chr04:18800839..18800863 (25 bp)
AAAATTGCTGCTTGATCGTGAGGAT
LOC_Os04g31700
Os.8672.1.S1_at--1159--991Chr04:18800802..18800826 (25 bp)
AGGATCCAGGTGTCCATCGAGTGAT
LOC_Os04g31700
Os.8672.1.S1_at--957--1071Chr04:18800732..18800756 (25 bp)
AGGGCAAATCGCCTTCAATATTGAA
LOC_Os04g31700
Os.8672.1.S1_at--780--9971Chr04:18800681..18800705 (25 bp)
TAGCCGTTTAGCGTAGTACCTTGAA
LOC_Os04g31700
Os.8672.1.S1_at--678--10471Chr04:18800653..18800677 (25 bp)
TTACTTCTGCGAGTTGGGTTTTCCT
LOC_Os04g31700
Os.8672.1.S1_at--954--3671Chr04:18800628..18800652 (25 bp)
CTTTGCGTTGCCTTGTGGTGTTAAT
LOC_Os04g31700
Os.8672.1.S1_at--940--9271Chr04:18800601..18800625 (25 bp)
TCCTGGATTCCTGTGTTGATTCAAA
LOC_Os04g31700
Target Sequence 
GATAAAAAGTACTGGTGCACCCCGACCTGGTAGCTTGCCATCTTTTCAGGAGATCAAGGATACTCTAGGGTTTAACCGAT
ATTACAAAGAAGAAAAGCAATATGCAACAGTCCAGCAAGCCCAGCCATTATCCACAAATATTGTACTTCGATTAAAGATC
ACAGAAAAAAGTGGAACGCAGAAGATAAATGAAGGGATACCTGCTGGAATCCTAGAGAAGATATCAAAAGCTATTCCAGG
CTTGGCTGGTGTCAATTTGACGGAAATACTTCAGGGTGCAGATCAGTCCCAGAAAGGAAAATTGCTGCTTGATCGTGAGG
ATGCAACTGGCGACAGGATCCAGGTGTCCATCGAGTGATCAATGCCTACATACATTGCCTAGAAGCATGGATGGCCAGTA
ATGTAGGGCAAATCGCCTTCAATATTGAAGCAAACGATTTTCCAAGTTGTAATGGTAGCCGTTTAGCGTAGTACCTTGAA
GTGTTACTTCTGCGAGTTGGGTTTTCCTCTTTGCGTTGCCTTGTGGTGTTAATAATCCTGGATTCCTGTGTTGATTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis