Browse Element(s) Details


OsAffx.3970.1.S1_at

Description tigr:9632.m03024
TID=OsAffx.3970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA
LOC_Os04g31780OsAffx.14077.1.S1_x_at11/114+18827190..18827928hypothetical protein
LOC_Os04g31790Os.49826.1.S1_at11/114+18833215..18850327expressed protein
LOC_Os04g31790OsAffx.21285.1.S1_at1/114+18833215..18850327expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3970.1.S1_at--174--4531Chr04:18817918..18817942 (25 bp)
GCCGCGCGGCGATGTACATCTCGAG
LOC_Os04g31760
OsAffx.3970.1.S1_at--823--751Chr04:18817907..18817931 (25 bp)
ATGTACATCTCGAGGGTGCAGGAGC
LOC_Os04g31760
OsAffx.3970.1.S1_at--400--4051Chr04:18817857..18817881 (25 bp)
CGAGGAGTACTGGAGGAATCGCTAC
LOC_Os04g31760
OsAffx.3970.1.S1_at--1087--1171Chr04:18817852..18817876 (25 bp)
AGTACTGGAGGAATCGCTACTGACA
LOC_Os04g31760
OsAffx.3970.1.S1_at--696--8011Chr04:18817846..18817870 (25 bp)
GGAGGAATCGCTACTGACAGTGATC
LOC_Os04g31760
OsAffx.3970.1.S1_at--1111--5251Chr04:18817842..18817866 (25 bp)
GAATCGCTACTGACAGTGATCTATA
LOC_Os04g31760
OsAffx.3970.1.S1_at--694--1971Chr04:18817834..18817858 (25 bp)
ACTGACAGTGATCTATAGCTCTTAA
LOC_Os04g31760
OsAffx.3970.1.S1_at--68--9551Chr04:18817823..18817847 (25 bp)
TCTATAGCTCTTAACACACCACAGT
LOC_Os04g31760
OsAffx.3970.1.S1_at--772--291Chr04:18817820..18817844 (25 bp)
ATAGCTCTTAACACACCACAGTATT
LOC_Os04g31760
OsAffx.3970.1.S1_at--732--4811Chr04:18817817..18817841 (25 bp)
GCTCTTAACACACCACAGTATTATT
LOC_Os04g31760
OsAffx.3970.1.S1_at--182--2471Chr04:18817811..18817835 (25 bp)
AACACACCACAGTATTATTACTATT
LOC_Os04g31760
Target Sequence 
GCCGCGCGGCGATGTACATCTCGAGGGTGCAGGAGCGGCTGAGGCGCGAGCGCGCGGCGAGCGAGGAGTACTGGAGGAAT
CGCTACTGACAGTGATCTATAGCTCTTAACACACCACAGTATTATTACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis