Browse Element(s) Details


OsAffx.3968.1.S1_at

Description tigr:9632.m03019
TID=OsAffx.3968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3171011/11expressed protein
LOC_Os12g082902/11U-box domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA
LOC_Os04g31780OsAffx.14077.1.S1_x_at11/114+18827190..18827928hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3968.1.S1_at--908--10631Chr04:18807500..18807610 (25 bp)
TTCCGCGGCAGCACGTGGTTCCAGG
LOC_Os04g31710
OsAffx.3968.1.S1_at--733--5051Chr04:18807507..18807617 (25 bp)
GCAGCACGTGGTTCCAGGCGTACGT
LOC_Os04g31710
OsAffx.3968.1.S1_at--620--1292Chr04:18807737..18807761 (25 bp)
AGATCCTCACCGAGAACGTGGTCGG
LOC_Os04g31710
OsAffx.3968.1.S1_at--514--8613Chr11:21033652..21033676 (25 bp)
TGGTGCCGCTGCTCTACACGGTGCG
NONE
OsAffx.3968.1.S1_at--410--9093Chr11:21033661..21033685 (25 bp)
TGCTCTACACGGTGCGCCGCGTGTT
NONE
OsAffx.3968.1.S1_at--860--9331Chr04:18807836..18807860 (25 bp)
TCGCCGTCGACTGGGTGTACGACGC
LOC_Os04g31710
OsAffx.3968.1.S1_at--325--9331Chr04:18807902..18807926 (25 bp)
TCGCCTGGATGTGGTTCGGCCGCTA
LOC_Os04g31710
OsAffx.3968.1.S1_at--212--3911Chr04:18807906..18807930 (25 bp)
CTGGATGTGGTTCGGCCGCTACCTC
LOC_Os04g31710
OsAffx.3968.1.S1_at--628--4791Chr04:18807998..18808022 (25 bp)
GCTCCTTCGAGAAGTACTTCCGCAT
LOC_Os04g31710
OsAffx.3968.1.S1_at--482--4071Chr04:18808005..18808029 (25 bp)
CGAGAAGTACTTCCGCATGCGCGAC
LOC_Os04g31710
OsAffx.3968.1.S1_at--902--7431Chr04:18808033..18808057 (25 bp)
GTGTACGCCGAGACCGCCGAGGACC
LOC_Os04g31710
Target Sequence 
TTCCGCGGCAGCACGTGGTTCCAGGCGTACGTGGTGCTGGGGACGACGGTGGGGCTGTTCCTGCCGCTGGCGCACGTGCT
GGGCGGATTCGCGCGCGGGGACGACGGCGCGGTGAGGTCGGCGACGCCGCACCTGTTCCTCCTCTCGTGCCAGATCCTCA
CCGAGAACGTGGTCGGCGCCCTGGGCGCCGCGTTCTCGCCGCCGGTCAGGGCGCTGGTGCCGCTGCTCTACACGGTGCGC
CGCGTGTTCGTCGCCGTCGACTGGGTGTACGACGCGTGGGGGAACCGCGCCGCCGCCGCCGCGCCGCAGGAGGCGGTCGC
CTGGATGTGGTTCGGCCGCTACCTCGCCGTCGCCAACCTCGTCTACTTCTCCACCAACCTCCTCGTCTTCCTCATTCCCA
AGTTCCTCCCCCGCTCCTTCGAGAAGTACTTCCGCATGCGCGACGAGGTGTACGCCGAGACCGCCGAGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis