Browse Element(s) Details


OsAffx.14073.1.S1_at

Description tigr:9632.m03013
TID=OsAffx.14073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3166011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31630Os.20441.1.A1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31630OsAffx.26273.1.S1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14073.1.S1_at--920--451Chr04:18779891..18779915 (25 bp)
ATCTCATGGATGCTTTTCATGCTGA
LOC_Os04g31660
OsAffx.14073.1.S1_at--435--2831Chr04:18779867..18779891 (25 bp)
AAGTTCTTGCACTCAGAGCTGGAGT
LOC_Os04g31660
OsAffx.14073.1.S1_at--985--6851Chr04:18779806..18779830 (25 bp)
GTTTGAAACTGATTCCCTGACGCTG
LOC_Os04g31660
OsAffx.14073.1.S1_at--521--2131Chr04:18779753..18779777 (25 bp)
ACAGACTTGCTGCAACTGGTGGTCT
LOC_Os04g31660
OsAffx.14073.1.S1_at--247--2571Chr04:18779740..18779764 (25 bp)
AACTGGTGGTCTCTGTCTTGATATA
LOC_Os04g31660
OsAffx.14073.1.S1_at--332--10231Chr04:18779717..18779741 (25 bp)
TATTGCAGCCCTGTGTTATTTCTTT
LOC_Os04g31660
OsAffx.14073.1.S1_at--74--8791Chr04:18779689..18779713 (25 bp)
TGTTTTCAGCTTTCACTATTGTCCT
LOC_Os04g31660
OsAffx.14073.1.S1_at--353--3691Chr04:18779674..18779698 (25 bp)
CTATTGTCCTCGCAACTGTAACAGA
LOC_Os04g31660
OsAffx.14073.1.S1_at--1037--4811Chr04:18779640..18779664 (25 bp)
GCTCTAGCTGCACTCGGATGTAATA
LOC_Os04g31660
OsAffx.14073.1.S1_at--354--7991Chr04:18779625..18779649 (25 bp)
GGATGTAATAACTCCCAGACAACTG
LOC_Os04g31660
OsAffx.14073.1.S1_at--458--7991Chr04:18779590..18779614 (25 bp)
GGATGGTTCCCCTCCAGATGTGGAG
LOC_Os04g31660
Target Sequence 
ATCTCATGGATGCTTTTCATGCTGAAGTTCTTGCACTCAGAGCTGGAGTTGAAGCAGCTGCTAGGAGAGGCATGATGAGA
GTTCAGTTTGAAACTGATTCCCTGACGCTGGTGCAAGGCTTGAAAAGTAGTAATGGATACAGACTTGCTGCAACTGGTGG
TCTCTGTCTTGATATATTGCAGCCCTGTGTTATTTCTTTTAATGTTTTCAGCTTTCACTATTGTCCTCGCAACTGTAACA
GAGTAGCTCATGCTCTAGCTGCACTCGGATGTAATAACTCCCAGACAACTGATGTCAGATGGGATGGTTCCCCTCCAGAT
GTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis