Browse Element(s) Details


OsAffx.26274.1.S1_at

Description tigr:9632.m03011
TID=OsAffx.26274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g316409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31620Os.23132.1.S2_at11/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31620Os.23132.1.S1_at10/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31630Os.20441.1.A1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31630OsAffx.26273.1.S1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26274.1.S1_at--333--3651Chr04:18769113..18769137 (25 bp)
CTTCATGCGCCGAAAAATGCTCCAA
LOC_Os04g31640
OsAffx.26274.1.S1_at--818--2271Chr04:18769127..18769151 (25 bp)
AAATGCTCCAAACCCAATGGCAGCT
LOC_Os04g31640
OsAffx.26274.1.S1_at--634--9231NONE
TCCTCGCACCGAGAAAGTAGTTTGC
NONE
OsAffx.26274.1.S1_at--1000--6911Chr04:18770573..18770597 (25 bp)
GTAGTTTGCTACTTTACCAGCTTAT
LOC_Os04g31640
OsAffx.26274.1.S1_at--617--2311NONE
AAAGTACACCGAAGACCGTCTCCAT
NONE
OsAffx.26274.1.S1_at--228--9671Chr04:18771031..18771055 (25 bp)
TCAGCTATGGCTCGATGGCACTTTC
LOC_Os04g31640
OsAffx.26274.1.S1_at--1101--6231Chr04:18771044..18771068 (25 bp)
GATGGCACTTTCTTCTTGCATTTGC
LOC_Os04g31640
OsAffx.26274.1.S1_at--625--10731Chr04:18771059..18771083 (25 bp)
TTGCATTTGCCATCCGGCTCTGTGT
LOC_Os04g31640
OsAffx.26274.1.S1_at--1099--7411Chr04:18771301..18771325 (25 bp)
GTGTTCCTTGCGTTTTGCAGAGCTT
LOC_Os04g31640
OsAffx.26274.1.S1_at--141--9051Chr04:18771316..18771340 (25 bp)
TGCAGAGCTTGTGGTCAGTTTGTTA
LOC_Os04g31640
OsAffx.26274.1.S1_at--589--10251Chr04:18771334..18771358 (25 bp)
TTTGTTAGGATCAACTGCCGTCGGC
LOC_Os04g31640
Target Sequence 
CTTCATGCGCCGAAAAATGCTCCAAACCCAATGGCAGCTCCTCCTCGCACCGAGAAAGTAGTTTGCTACTTTACCAGCTT
ATTAATCAACTGGATTTTATCGTGGAAAAAGTACACCGAAGACCGTCTCCATCGGTACGCCTCTGCGCCCACGACCCCAG
AGCCCCGCAGCGGGGATACCGCCGCCTCCGCTCAGCTATGGCTCGATGGCACTTTCTTCTTGCATTTGCCATCCGGCTCT
GTGTCCCTGCTCCGTCTGTGTTCCTTGCGTTTTGCAGAGCTTGTGGTCAGTTTGTTAGGATCAACTGCCGTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis