Browse Element(s) Details


Os.23132.1.S2_at

Description gb:BM420940
DB_XREF= gi:18387742
DB_XREF=U021E11
CLONE=U021E11
TID=Os.23132.1
CNT=6
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.23132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072J20, full insert sequence
FL= gb:AK121107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3162011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31620Os.23132.1.S2_at11/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31620Os.23132.1.S1_at10/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31630Os.20441.1.A1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31630OsAffx.26273.1.S1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23132.1.S2_at--63--1211Chr04:18750189..18750213 (25 bp)
AGTTTGCTCGTGACAGAGGCAGCCA
LOC_Os04g31620
Os.23132.1.S2_at--45--5091Chr04:18750207..18750231 (25 bp)
GCAGCCAGAGTTAGTGCTTGCTTCT
LOC_Os04g31620
Os.23132.1.S2_at--685--6591Chr04:18750295..18750319 (25 bp)
GATTGCTCTCTATATTTTCCACTGA
LOC_Os04g31620
Os.23132.1.S2_at--260--2331Chr04:18750450..18750474 (25 bp)
AAAGTCATCGGTGCAGAGGTTCTGG
LOC_Os04g31620
Os.23132.1.S2_at--100--10371Chr04:18750483..18750507 (25 bp)
TTTTTGCCGCTAATGACTCTCTTAA
LOC_Os04g31620
Os.23132.1.S2_at--1090--8971Chr04:18750533..18750557 (25 bp)
TGAACTAGGACATGGCGACGCACAG
LOC_Os04g31620
Os.23132.1.S2_at--597--6451Chr04:18750557..18750581 (25 bp)
GATCAAGTCATTAGTCTGGAGGCTA
LOC_Os04g31620
Os.23132.1.S2_at--622--8011Chr04:18750574..18750598 (25 bp)
GGAGGCTATGTTCAAGATGCGTACT
LOC_Os04g31620
Os.23132.1.S2_at--607--611Chr04:18750590..18750614 (25 bp)
ATGCGTACTGCAACAATTATTTATG
LOC_Os04g31620
Os.23132.1.S2_at--278--1971Chr04:18750646..18750670 (25 bp)
ACTGATTGTAGGTTCTAGGTGTTCC
LOC_Os04g31620
Os.23132.1.S2_at--523--5591Chr04:18750707..18750731 (25 bp)
GAAATTTCCTTATATTCTCATTCAG
LOC_Os04g31620
Target Sequence 
AGTTTGCTCGTGACAGAGGCAGCCAGAGTTAGTGCTTGCTTCTCAGGTATTGTTGAGATGATANGAATCGTCCNCTGTGG
AACGTACTAACTTTTGTTTTAATTTGGATTGCTCTCTATATTTTCCACTGACAATCAGTAATATGAGTTTCTNTTAANTA
ATTTGACTTCTTTTNCACATTNTCTACTGACNAAGAGTAACAAGTNTTNCCCCTNTTTGATAGTAAAATATATGCATTTN
GGTATGGAAGCATNATCTGCCATGCTGGAAAGTCATCGGTGCAGAGGTTCTGGATATGTTTTTTTTGCCGCTAATGACTC
TCTTAACATGTAAATGAATTTCTTTTCCAACTGAACTAGGACATGGCGACGCACAGATCAAGTCATTAGTCTGGAGGCTA
TGTTCAAGATGCGTACTGCAACAATTATTTATGTGAGCTATTCTGAAGGTTTTAGGTAGCTGAGACTGATTGTAGGTTCT
AGGTGTTCCGGGAGTAAAGAAAAGTAGGAGACATAATAAGCTAGTGAAATTTCCTTATATTCTCATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23132.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis