Browse Element(s) Details


OsAffx.17597.1.S1_x_at

Description tigr:9637.m00558
TID=OsAffx.17597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g316401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31620Os.23132.1.S2_at11/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31620Os.23132.1.S1_at10/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31630Os.20441.1.A1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31630OsAffx.26273.1.S1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17597.1.S1_x_at--944--1071Chr09:4046347..4046433 (25 bp)
AGGGAAGGGCTTCCGCAGCGGCATC
NONE
OsAffx.17597.1.S1_x_at--148--1091Chr09:4046342..4046428 (25 bp)
AGGGCTTCCGCAGCGGCATCTGGGA
NONE
OsAffx.17597.1.S1_x_at--822--2911Chr09:4046280..4046304 (25 bp)
AAGGATCCGGCTGGCTTGAGAGAAA
NONE
OsAffx.17597.1.S1_x_at--680--6371Chr09:4046277..4046301 (25 bp)
GATCCGGCTGGCTTGAGAGAAAACG
NONE
OsAffx.17597.1.S1_x_at--485--4711Chr09:4046271..4046295 (25 bp)
GCTGGCTTGAGAGAAAACGGATCCT
NONE
OsAffx.17597.1.S1_x_at--1044--8231Chr09:4046268..4046292 (25 bp)
GGCTTGAGAGAAAACGGATCCTGGC
NONE
OsAffx.17597.1.S1_x_at--541--5991Chr09:4046263..4046287 (25 bp)
GAGAGAAAACGGATCCTGGCGGAGG
NONE
OsAffx.17597.1.S1_x_at--269--104738Chr10:13725213..13725232 (20 bp)
TTACAAAATCGTCCTCCAACAGCAA
NONE
OsAffx.17597.1.S1_x_at--795--9311Chr09:4045960..4045984 (25 bp)
TCCCTCATCTAACAAAACCGTTCGA
NONE
OsAffx.17597.1.S1_x_at--1161--9551Chr09:4045956..4045980 (25 bp)
TCATCTAACAAAACCGTTCGATTTA
NONE
OsAffx.17597.1.S1_x_at--599--1771Chr09:4045944..4045968 (25 bp)
ACCGTTCGATTTAGATCCTTCGGTG
NONE
Target Sequence 
AGGGAAGGGCTTCCGCAGCGGCATCTGGGAGGAGAATGTGGTGGTGAAGAAGATCCCGGCGGTGGAGAAGGATCCGGCTG
GCTTGAGAGAAAACGGATCCTGGCGGAGGAGAAGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAAA
TCGTCCTCCAACAGCAAAACCAGATACCGGACGTCCCTCATCTAACAAAACCGTTCGATTTAGATCCTTCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17597.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis