Browse Element(s) Details


Os.23132.1.S1_at

Description gb:AK121107.1
DB_XREF= gi:37990730
TID=Os.23132.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072J20, full insert sequence.
FL= gb:AK121107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3162010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31620Os.23132.1.S2_at11/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31620Os.23132.1.S1_at10/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31630Os.20441.1.A1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31630OsAffx.26273.1.S1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23132.1.S1_at--386--5871Chr04:18748536..18748631 (25 bp)
GAGCCTTGCAAATGCACCGTGGGCA
LOC_Os04g31620
Os.23132.1.S1_at--544--8851Chr04:18748595..18748619 (25 bp)
TGATCCGTCGCAGAGCATCGCAAAT
LOC_Os04g31620
Os.23132.1.S1_at--855--1531Chr04:18748608..18748632 (25 bp)
AGCATCGCAAATGCACCCTGGGCAA
LOC_Os04g31620
Os.23132.1.S1_at--386--1571Chr04:18748658..18748682 (25 bp)
AGCTACTGCTGATCACTCACAGAGC
LOC_Os04g31620
Os.23132.1.S1_at--462--1551Chr04:18748680..18748704 (25 bp)
AGCATTGCAAGTGCACCTTGGGCCA
LOC_Os04g31620
Os.23132.1.S1_at--565--10251Chr04:18749758..18749782 (25 bp)
TTTGGGACTCACATCTTTAACCTTG
LOC_Os04g31620
Os.23132.1.S1_at--1005--2631Chr04:18749776..18749800 (25 bp)
AACCTTGCTGTGCTGTTATGACCAT
LOC_Os04g31620
Os.23132.1.S1_at--1142--1251Chr04:18749854..18749878 (25 bp)
AGATTATCTGCTCTATCTCCATCTT
LOC_Os04g31620
Os.23132.1.S1_at--319--5431Chr04:18749894..18749918 (25 bp)
GAACCATTTACTGATGCTTTTCTTA
LOC_Os04g31620
Os.23132.1.S1_at--666--7131Chr04:18749932..18749956 (25 bp)
GTCATTACTTGGCATTTTTCCTGTG
LOC_Os04g31620
Os.23132.1.S1_at--855--6271NONE
GATGTCACTTTAATTGTCTGTTGGC
NONE
Target Sequence 
GAGCCTTGCAAATGCACCGTGGGCAACTCACAGTGCACCACCTCCACCTCCTTCTGGTGCTGATCCGTCGCAGAGCATCG
CAAATGCACCCTGGGCAACTCACAGTGCACCACCTCCACCACCAGCTACTGCTGATCACTCACAGAGCATTGCAAGTGCA
CCTTGGGCCACTCACAATGCACCGCCTCCACCACCACCACCTTCCAGCATTGAGCAGCCTCCTNCTACATATGGTGCTGA
TGCAGAGTATGATAAGTTTATGTCAGAGATGAAGTGATGTGAGCCAAGATGAAGCAATTCTTCCAACAGTGGAAAAAGGC
TTAAGGTTTCTTGGAGCTAGTGCCAGAATGATTTATTTCTTGTTGGAAGTTTGGGACTCACATCTTTAACCTTGCTGTGC
TGTTATGACCATTGCAGAGGTTTCATGATTATGAAGGACGTTAATGACAGGGCACAGAGGAAACCAGATTATCTGCTCTA
TCTCCATCTTCGAGAACCATTTTAAGAACCATTTACTGATGCTTTTCTTATCTTAAAATTCTTGTCATTACTTGGCATTT
TTCCTGTGATGTCACTTTAATTGTCTGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis