Browse Element(s) Details


Os.49837.1.S1_a_at

Description gb:AY345223.2
DB_XREF= gi:34864151
TID=Os.49837.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49837 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS55 mRNA, complete cds.
PROD=transcription factor MADS55
FL= gb:AY345223.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g113309/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11310Os.50764.1.S1_at10/116+5929406..5930985Plastocyanin-like domain containing protein, expressed
LOC_Os06g11320Os.15219.1.S1_at11/116+5932790..5938506peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os06g11330Os.49837.1.S1_a_at9/116+5951600..5962310SRF-type transcription factor family protein, expressed
LOC_Os06g11340NANA6+5964519..5966760retrotransposon, putative, centromere-specific
LOC_Os06g11350NANA6+5968231..5969041retrotransposon, putative, centromere-specific
LOC_Os06g11360OsAffx.11821.1.S1_at1/116+5974646..5975460hypothetical protein
LOC_Os06g11360OsAffx.8723.1.S1_at1/116+5974646..5975460hypothetical protein
LOC_Os06g11370Os.32942.1.S1_at9/116+5976442..5979609MED6 mediator sub complex component family protein, expressed
LOC_Os06g11380Os.14390.1.S1_at11/116+5981670..5986672kinesin motor protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49837.1.S1_a_at--532--1231NONE
AGTTCGCCAGCTCCAATATGAACGA
NONE
Os.49837.1.S1_a_at--390--6471Chr06:5958735..5958759 (25 bp)
GATAAGCAGCCTTCTATTGATCTGA
LOC_Os06g11330
Os.49837.1.S1_a_at--295--5951Chr06:5957334..5957358 (25 bp)
GAGCACAGCAAGTGTAGCAGTTTGA
LOC_Os06g11330
Os.49837.1.S1_a_at--1026--9631Chr06:5956945..5956965 (21 bp)
TCAGTGAGCTCCAACGAAAGGGCAT
LOC_Os06g11330
Os.49837.1.S1_a_at--1011--5951Chr06:5952893..5952916 (24 bp)
GAGAATATGCGCCTCAGAGACCAAA
LOC_Os06g11330
Os.49837.1.S1_a_at--1160--5991Chr06:5952733..5952900 (25 bp)
GAGACCAAATGCCTCAGGTGCCTAC
LOC_Os06g11330
Os.49837.1.S1_a_at--932--9631Chr06:5952720..5952744 (25 bp)
TCAGGTGCCTACTGCTGGCTTGGCG
LOC_Os06g11330
Os.49837.1.S1_a_at--558--8271Chr06:5952704..5952728 (25 bp)
GGCTTGGCGGTTCCTGATACTGAAA
LOC_Os06g11330
Os.49837.1.S1_a_at--979--2171Chr06:5952630..5952654 (25 bp)
AAATTCGGGAAGCTCGCAGGATAAT
LOC_Os06g11330
Os.49837.1.S1_a_at--276--8871Chr06:5952603..5952627 (25 bp)
TGATGGTTCTGATATATCCCTGAAA
LOC_Os06g11330
Os.49837.1.S1_a_at--1141--511NONE
ATCCCTGAAACTAGGGTTGCCTTGA
NONE
Target Sequence 
AGTTCGCCAGCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGATAAGCAG
CCTTCTATTGATCTGAATTTCTTCTTAATTATATTGCTTCGTACATATACTAACAGTTATGCATATATTCACCTTCTTCT
TCAGTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTG
AGGAGCTTGAGGGATTGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGT
ACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTGGCAGAAGAGAATATGCGCCT
CAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAAT
CATCTGAATCTGTGATGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTA
GGGTTGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49837.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis