Browse Element(s) Details


Os.49846.1.S1_at

Description gb:AK099220.1
DB_XREF= gi:32984429
TID=Os.49846.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013086L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013086L24, full insert sequence.
FL= gb:AK099220.1 gb:AK111928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4288011/11WD repeat-containing protein C9orf112 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49846.1.S1_at--1039--8951Chr04:25157039..25157063 (25 bp)
TGAAACCCGTTAATGTGAAGTCCCT
LOC_Os04g42880
Os.49846.1.S1_at--490--4991Chr04:25157202..25157226 (25 bp)
GCATGAGTCCTTAGCATATGGTGCG
LOC_Os04g42880
Os.49846.1.S1_at--771--1231Chr04:25157271..25157295 (25 bp)
AGTTGTTGCTACCTGTTCATTTTAT
LOC_Os04g42880
Os.49846.1.S1_at--382--10551Chr04:25157286..25157310 (25 bp)
TTCATTTTATGATCGACTCCTCCGT
LOC_Os04g42880
Os.49846.1.S1_at--967--7411Chr04:25157313..25157337 (25 bp)
GTGGCAACCGGAGAACCTAGGCAAT
LOC_Os04g42880
Os.49846.1.S1_at--284--8671Chr04:25157382..25157406 (25 bp)
TGTGGACTTGTTTCCAGGTAGCTCC
LOC_Os04g42880
Os.49846.1.S1_at--669--7851Chr04:25157398..25157422 (25 bp)
GGTAGCTCCTCAAAGTTGTGCTGAT
LOC_Os04g42880
Os.49846.1.S1_at--2--7191Chr04:25157456..25157480 (25 bp)
GTCTGTTCCATAGCTTGTCATTCAC
LOC_Os04g42880
Os.49846.1.S1_at--882--231Chr04:25157483..25157507 (25 bp)
ATATTTGTGTGATGCCAGCTTTCCC
LOC_Os04g42880
Os.49846.1.S1_at--890--4871Chr04:25157500..25157524 (25 bp)
GCTTTCCCGTCGCAAAACTATATAT
LOC_Os04g42880
Os.49846.1.S1_at--102--811Chr04:25157529..25157553 (25 bp)
ATGGTCCTCAAAGATGTTTCCTGTT
LOC_Os04g42880
Target Sequence 
TGAAACCCGTTAATGTGAAGTCCCTAAATTTAGGGGGTGGTGTATGGAGGATTAAATATCATCCTCTTATTGCAGATGTT
GTCTTGGCTGCATGCATGCACAATGGGTTTGCCATTGTTAAAGTAGGTACTGGGGATGCTGCAGTAGTGGAAACATATTG
CAAGCATGAGTCCTTAGCATATGGTGCGGATTGGCAGATAAATGAAGGTGCAGAACAGAACAAGAATTTTTCAGTTGTTG
CTACCTGTTCATTTTATGATCGACTCCTCCGTGTGTGGCAACCGGAGAACCTAGGCAATCTTTAAGAGTGAAAGTGCCAT
TGCACTCAGTTCAAGTATCACTATGTGGACTTGTTTCCAGGTAGCTCCTCAAAGTTGTGCTGATTTATTTAAAGACATGA
GCTTTTGGTAGAATCATGTCTGTTCCATAGCTTGTCATTCACATATATTTGTGTGATGCCAGCTTTCCCGTCGCAAAACT
ATATATTTGTATGGTCCTCAAAGATGTTTCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis