Browse Element(s) Details


Os.49865.1.S1_at

Description gb:AK112100.1
DB_XREF= gi:37988763
TID=Os.49865.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F01, full insert sequence.
FL= gb:AK112100.1 gb:AK101046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5478011/11Protein CYPRO4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed
LOC_Os02g54790Os.49661.1.S1_at8/112+33546302..33550653hypothetical protein
LOC_Os02g54800NANA2+33556054..33556542hypothetical protein
LOC_Os02g54810OsAffx.3075.1.S1_at10/112+33558559..33559082hypothetical protein
LOC_Os02g54820Os.12391.1.S1_a_at11/112+33563488..33568249trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49865.1.S1_at--1037--4331Chr02:33544047..33544071 (25 bp)
CCATGAGTGCTACCGCGATCAGGAA
LOC_Os02g54780
Os.49865.1.S1_at--883--2751Chr02:33544109..33544133 (25 bp)
AAGACGAATCCATTGTTGACAGCCG
LOC_Os02g54780
Os.49865.1.S1_at--437--10751Chr02:33544124..33544148 (25 bp)
TTGACAGCCGTTTCATGCACGAGAA
LOC_Os02g54780
Os.49865.1.S1_at--193--2851Chr02:33544202..33544226 (25 bp)
AAGTCAGCTCCTTCAGTTTAGCCAA
LOC_Os02g54780
Os.49865.1.S1_at--891--10391Chr02:33544251..33544275 (25 bp)
TTTTGCTTTGCGTATCATGGTGGGA
LOC_Os02g54780
Os.49865.1.S1_at--66--9931Chr02:33544281..33544305 (25 bp)
TACTGGTTTTTGTGTAGCTCACTGC
LOC_Os02g54780
Os.49865.1.S1_at--259--9131Chr02:33544303..33544327 (25 bp)
TGCTGTTCCTTTCGTGGTGCGAGAA
LOC_Os02g54780
Os.49865.1.S1_at--41--451Chr02:33544327..33544351 (25 bp)
ATCTACAGGTTCACTGCTGTTCCTA
LOC_Os02g54780
Os.49865.1.S1_at--990--8731Chr02:33544445..33544469 (25 bp)
TGTAACTAGGTTTCGGTGTACTCTT
LOC_Os02g54780
Os.49865.1.S1_at--95--1891Chr02:33544481..33544505 (25 bp)
ACGATAGCGTTCTGGGTGAAGACCT
LOC_Os02g54780
Os.49865.1.S1_at--954--1371Chr02:33544500..33544524 (25 bp)
AGACCTAATCTCTTCTGGGACTGGA
LOC_Os02g54780
Target Sequence 
CCATGAGTGCTACCGCGATCAGGAAGGGCTCAAGAGCTGCTATTGTTACAAAGTTGTCCTGAAAGACGAATCCATTGTTG
ACAGCCGTTTCATGCACGAGAAATTTGCAACAACCGACTCCCCTGAGGCTCCTCTGGTGGTGGCAACACCCATGAAAGTC
AGCTCCTTCAGTTTAGCCAATAGNCGATTACACTGACAGTCTTATTTTGCTTTGCGTATCATGGTGGGAGAATCTACTGG
TTTTTGTGTAGCTCACTGCTGTTCCTTTCGTGGTGCGAGAATCTACAGGTTCACTGCTGTTCCTATTGGTTCATTTGTTA
CTTGATTTTGGTGTAGCAGGCATGTTGATAATACTAGTACTCTTTGTGAAGATTGCTGGAGTTGTAATACTTGTTAGNTG
TAACTAGGTTTCGGTGTACTCTTTGTAAATGTTGACGATAGCGTTCTGGGTGAAGACCTAATCTCTTCTGGGACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis