Browse Element(s) Details


Os.49871.1.S1_x_at

Description gb:AK119181.1
DB_XREF= gi:37988804
TID=Os.49871.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013101I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G12, full insert sequence.
FL= gb:AK119181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4280011/11Uncharacterised protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42750OsAffx.11446.1.S1_at10/111+24655231..24657138hypothetical protein
LOC_Os01g42750OsAffx.787.1.S1_at2/111+24655231..24657138hypothetical protein
LOC_Os01g42760OsAffx.9134.1.S1_s_at11/111+24661228..24663006expressed protein
LOC_Os01g42770Os.37805.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42770Os.50844.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49871.1.S1_x_at--590--7811Chr01:24682640..24682664 (25 bp)
GGTACTTCTTTTGAATGGGTCGCAT
LOC_Os01g42800
Os.49871.1.S1_x_at--538--2411Chr01:24682608..24682632 (25 bp)
AAACAACTGGGTTGCCTGCTTCTGG
LOC_Os01g42800
Os.49871.1.S1_x_at--806--7371Chr01:24682579..24682603 (25 bp)
GTGACTGCCATTACTGATTCTCTAA
LOC_Os01g42800
Os.49871.1.S1_x_at--764--3491Chr01:24681326..24681518 (25 bp)
CATGTGGTTACTGTGGACTCTATAC
LOC_Os01g42800
Os.49871.1.S1_x_at--626--7591Chr01:24681288..24681312 (25 bp)
GGGCATTATTTTTGATCCGCATTCA
LOC_Os01g42800
Os.49871.1.S1_x_at--925--6371Chr01:24681275..24681299 (25 bp)
GATCCGCATTCATTGATTCAAGCCC
LOC_Os01g42800
Os.49871.1.S1_x_at--922--2651Chr01:24681256..24681280 (25 bp)
AAGCCCTGACCAGTCTAATATCGGA
LOC_Os01g42800
Os.49871.1.S1_x_at--306--6831Chr01:24681226..24681250 (25 bp)
GTTTCGTGGAACCTGATCTTCTAAC
LOC_Os01g42800
Os.49871.1.S1_x_at--731--10191Chr01:24681153..24681177 (25 bp)
TATATATCTCGCTCCTATTTTTTCC
LOC_Os01g42800
Os.49871.1.S1_x_at--545--2551Chr01:24681105..24681129 (25 bp)
AACTGTAGCATCAGTTGCCCACTTG
LOC_Os01g42800
Os.49871.1.S1_x_at--656--7111Chr01:24681074..24681098 (25 bp)
GTCAGCTAGCTTCATTGCTTCATTC
LOC_Os01g42800
Target Sequence 
GGTACTTCTTTTGAATGGGTCGCATGACAGAGAAACAACTGGGTTGCCTGCTTCTGGCTTTGTGACTGCCATTACTGATT
CTCTAAACCGTACATATGGATATCCTGACAAAAGTCTAAAGAATCTTCCCAAAGACTATGTGAATGCTTTATTGGTACCA
AAAGGAGGCCAAATTCCTTTGGATATAAAAAACTTGTCTTCTAAAGGAATCTTTCATGTGGTTACTGTGGACTCTATACA
CGATGGAAAGACGGGCATTATTTTTGATCCGCATTCATTGATTCAAGCCCTGACCAGTCTAATATCGGATAGGCGTTTCG
TGGAACCTGATCTTCTAACAGAAAATGTAGAGTCTGTATGCTGAAATCTCAGTTCTCAAATGTTAGGTATATATCTCGCT
CCTATTTTTTCCCTGTTCAATACATTGTATGGGGAAACTGTAGCATCAGTTGCCCACTTGCACTTCGTCAGCTAGCTTCA
TTGCTTCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49871.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis