Browse Element(s) Details


Os.49981.2.S1_x_at

Description gb:AK119479.1
DB_XREF= gi:37989102
TID=Os.49981.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-B11, full insert sequence.
FL= gb:AK119479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4300011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed
LOC_Os12g42980Os.2258.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42980OsAffx.32164.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42990OsAffx.7874.1.S1_at11/1112+26674244..26675783AT hook motif-containing protein, putative
LOC_Os12g43000Os.49981.2.S1_x_at11/1112+26681777..26684559expressed protein
LOC_Os12g43020Os.31497.2.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43020Os.45212.1.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43034NANA12+26695297..26698037retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43050NANA12+26702127..26708907retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49981.2.S1_x_at--143--6351Chr12:26682526..26682550 (25 bp)
GATGCTGCTCGATATTCAGGCTCAA
LOC_Os12g43000
Os.49981.2.S1_x_at--711--2631Chr12:26682503..26682527 (25 bp)
AACCTCCACAGTTCATGTTCCGAAG
LOC_Os12g43000
Os.49981.2.S1_x_at--226--6711Chr12:26682487..26682511 (25 bp)
GTTCCGAAGTAATTTTTGCTGCTCA
LOC_Os12g43000
Os.49981.2.S1_x_at--340--1551Chr12:26682433..26682457 (25 bp)
AGCTTCTCGACAATAATACTCCACC
LOC_Os12g43000
Os.49981.2.S1_x_at--56--331Chr12:26682418..26682442 (25 bp)
ATACTCCACCCAATGATCTTTTTTC
LOC_Os12g43000
Os.49981.2.S1_x_at--54--831Chr12:26682302..26682324 (23 bp)
ATGGTACTATTTTCACACCTCTCAA
LOC_Os12g43000
Os.49981.2.S1_x_at--959--31Chr12:26682248..26682272 (25 bp)
ATTGTGGTGCTCGATTCTGGTATGA
LOC_Os12g43000
Os.49981.2.S1_x_at--481--1351Chr12:26682127..26682151 (25 bp)
AGAACCTTTGCTCTCTCGTTTAACT
LOC_Os12g43000
Os.49981.2.S1_x_at--41--6031Chr12:26682098..26682122 (25 bp)
GAGATCGTGTTTTGTCCAACCACTT
LOC_Os12g43000
Os.49981.2.S1_x_at--948--811Chr12:26681996..26682020 (25 bp)
ATGGTCATGGCCCTTACATTTTCAA
LOC_Os12g43000
Os.49981.2.S1_x_at--452--10071Chr12:26681968..26681992 (25 bp)
TAGTGGGCAGCTATGCCACCGAATT
LOC_Os12g43000
Target Sequence 
GATGCTGCTCGATATTCAGGCTCAACCTCCACAGTTCATGTTCCGAAGTAATTTTTGCTGCTCAACACTAATGTTCTATC
TCGATGATCGTAAAGCTTCTCGACAATAATACTCCACCCAATGATCTTTTTTCTATGGTACTATTTTCACACCTCTCAAT
TTAGGAGGCCCTACCCATACTTGCCAACATTGTGGTGCTCGATTCTGGTATGAGGAACGCGTACGTGGGTGTGGACGAAC
AGCTTTGCAAATTTACAACAAATGCTGTAGAGGAGGGAGCATTTATTTGCCTCCATATAGGCCACCACCAGAACCTTTGC
TCTCTCGTTTAACTGGACGAGATCGTGTTTTGTCCAACCACTTCTTTGAAAACATCAGACGATACAATTCTATGTTTGCT
ATGACATCTATGGGTGTAAATATCATCAACTCAATTAATGATGGTCATGGCCCTTACATTTTCAAGATTAGTGGGCAGCT
ATGCCACCGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49981.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis