Browse Element(s) Details


Os.2258.1.S1_at

Description gb:AF073695.1
DB_XREF= gi:4574134
GEN=rcs1
TID=Os.2258.1
CNT=73
FEA=FLmRNA
TIER=FL+Stack
STK=33
UG=Os.2258 (NCBI UniGene Cluster)
DEF=Oryza sativa cysteine synthase (rcs1) mRNA, complete cds.
PROD=cysteine synthase
FL= gb:AK061993.1 gb:AK099598.1 gb:AF073695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4298011/11Cysteine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed
LOC_Os12g42980Os.2258.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42980OsAffx.32164.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42990OsAffx.7874.1.S1_at11/1112+26674244..26675783AT hook motif-containing protein, putative
LOC_Os12g43000Os.49981.2.S1_x_at11/1112+26681777..26684559expressed protein
LOC_Os12g43020Os.31497.2.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43020Os.45212.1.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2258.1.S1_at--613--8511Chr12:26665782..26665806 (25 bp)
TGGAATATCTTCAGGTGCAGCTGCA
LOC_Os12g42980
Os.2258.1.S1_at--955--1511Chr12:26665758..26665782 (25 bp)
AGCAGCAGCTGTTAGGCTCGCTCAG
LOC_Os12g42980
Os.2258.1.S1_at--1145--10071Chr12:26665746..26665770 (25 bp)
TAGGCTCGCTCAGAGGCCGGAAAAT
LOC_Os12g42980
Os.2258.1.S1_at--264--10791Chr12:26665349..26665371 (23 bp)
TTGTTGTCTTCCCAAGCTTTGGTGA
LOC_Os12g42980
Os.2258.1.S1_at--1160--10811Chr12:26665331..26665355 (25 bp)
TTGGTGAGCGGTACCTTTCGTCGGT
LOC_Os12g42980
Os.2258.1.S1_at--994--6551Chr12:26665202..26665226 (25 bp)
GATTAAACATACATTGTCCTGCCAT
LOC_Os12g42980
Os.2258.1.S1_at--786--7251Chr12:26665187..26665211 (25 bp)
GTCCTGCCATTTTCAAGTTGTTCTG
LOC_Os12g42980
Os.2258.1.S1_at--1008--3451Chr12:26665141..26665165 (25 bp)
CAGTGTGTTAGCCTTGTAGTGTTAA
LOC_Os12g42980
Os.2258.1.S1_at--995--2071Chr12:26665109..26665133 (25 bp)
ACATTTTATCTTCCCTGTATATCAG
LOC_Os12g42980
Os.2258.1.S1_at--732--371Chr12:26665089..26665113 (25 bp)
ATCAGAACCCTTTACATGGGCATTT
LOC_Os12g42980
Os.2258.1.S1_at--229--8651Chr12:26665073..26665097 (25 bp)
TGGGCATTTGTCAGCCAGTGTGAAT
LOC_Os12g42980
Target Sequence 
TGGAATATCTTCAGGTGCAGCTGCAGCAGCAGCTGTTAGGCTCGCTCAGAGGCCGGAAAATGAAGGAAAACTTTTTGTTG
TTGTCTTCCCAAGCTTTGGTGAGCGGTACCTTTCGTCGGTGCTCTTCCAGTCCATCAAGAAGGAAGCTGAAAACATGGTG
GTTGAATGAAATGCACAATATCCGGGAATCCACAGGAATAAAAGTTTGGTATCTCTGCTTGTGTGATTAAACATACATTG
TCCTGCCATTTTCAAGTTGTTCTGCTTGTGTAGCAATGGGGAACACAGTGTGTTAGCCTTGTAGTGTTAAACAGTTTACA
TTTTATCTTCCCTGTATATCAGAACCCTTTACATGGGCATTTGTCAGCCAGTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis